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Chemistry

Molecular modeling and reactions.

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computational-chemistry
121

ljg-xray-article

X-ray scans articles (blog posts, essays, opinion pieces) to extract the real question and cognitive collisions. Use when user shares a non-academic article URL or text for deep structural analysis. Do NOT use for academic papers (use ljg-xray-paper) or books (use ljg-xray-book).

lijigang
lijigang
research
open
computational-chemistry
116

nansen-smart-money-alpha

What tokens is smart money accumulating before they pump? Token screener with SM filter cross-referenced against netflow.

nansen-ai
nansen-ai
research
open
computational-chemistry
115

stpa-overview

Entry point for STPA (System Theoretic Process Analysis) hazard analysis. Guides through all 4 steps sequentially. When starting a new STPA analysis session. When the human partner mentions safety analysis, hazard analysis, or risk assessment. When analyzing control systems for potential failures.

sandgardenhq
sandgardenhq
research
open
computational-chemistry
115

stpa-step4-loss-scenarios

STPA Step 4 - Identify Loss Scenarios by tracing causal pathways back through control loops to understand why UCAs might occur. After completing STPA Step 3. When you need to understand WHY unsafe control actions might happen. When developing recommendations and mitigations.

sandgardenhq
sandgardenhq
research
open
computational-chemistry
115

bulkrna-splicing

Alternative splicing analysis — PSI quantification, differential splicing event detection from rMATS/SUPPA2 output.

TianGzlab
TianGzlab
research
open
computational-chemistry
115

proteomics-quantification

Protein/peptide quantification (LFQ, TMT, DIA) using MaxQuant LFQ, DIA-NN, or Skyline.

TianGzlab
TianGzlab
research
open
computational-chemistry
115

proteomics-de

Differential protein abundance testing using MSstats, limma, proDA, and scipy/statsmodels for Python. Multiple testing correction with BH FDR.

TianGzlab
TianGzlab
research
open
computational-chemistry
115

sc-doublet-detection

Annotate putative doublets in single-cell RNA-seq data using Scrublet, DoubletDetection, DoubletFinder, scDblFinder, or scds. The wrapper preserves the current AnnData matrix semantics, standardizes output columns in `obs`, and exports a reusable figure/table gallery.

TianGzlab
TianGzlab
research
open
computational-chemistry
115

proteomics-identification

Database search for peptide/protein identification using MaxQuant, MS-GF+, Comet, or Mascot.

TianGzlab
TianGzlab
research
open
computational-chemistry
115

metabolomics-quantification

Feature quantification, missing value imputation, and normalization for metabolomics data.

TianGzlab
TianGzlab
research
open
computational-chemistry
113

lp-math

AMM liquidity provision mathematics including constant-product, concentrated liquidity, price impact, and LP share calculations

NeverSight
NeverSight
research
open
computational-chemistry
113

cointegration-analysis

Cointegration testing for pairs trading using Engle-Granger, Johansen, and rolling stability analysis

NeverSight
NeverSight
research
open
computational-chemistry
113

token-holder-analysis

Token holder distribution, concentration metrics, insider detection, and supply analysis for Solana tokens

NeverSight
NeverSight
research
open
computational-chemistry
113

web-state-jotai

Atomic state management with auto-dependency tracking

NeverSight
NeverSight
research
open
computational-chemistry
113

gemini-watermark

Remove visible Gemini AI watermarks from images via reverse alpha blending. Use for cleaning Gemini-generated images, removing the star/sparkle logo watermark, batch watermark removal.

NeverSight
NeverSight
research
open
computational-chemistry
112

task-classifier

Classifies task complexity (1-10) for model and agent routing

alfredolopez80
alfredolopez80
research
open
computational-chemistry
112

minimax-mcp-usage

[DEPRECATED] Use /research skill with Zai MCP instead - Optimal patterns for MiniMax MCP tools

alfredolopez80
alfredolopez80
research
open
computational-chemistry
106

neqsim-physics-explanations

Physics explanations for common NeqSim results. USE WHEN: users ask 'why' about simulation results, when explaining unexpected behavior, or when adding educational context to notebooks and reports. Maps common engineering phenomena to plain-language explanations.

equinor
equinor
research
open
computational-chemistry
106

neqsim-input-validation

Input validation rules for NeqSim simulations. USE WHEN: setting up thermodynamic systems, process equipment, or running simulations. Catches physically impossible or suspect inputs before simulation runs, saving time and providing corrective guidance.

equinor
equinor
research
open
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