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Scientific computing and academic tools.

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academic

397

literature-engineer

Multi-route literature expansion + metadata normalization for evidence-first surveys. Produces a large candidate pool (`papers/papers_raw.jsonl`, target ≥1200) with stable IDs and provenance, ready for dedupe/rank + citation generation. **Trigger**: evidence collector, literature engineer, 文献扩充, 多路召回, snowballing, cited by, references, 元信息增强, provenance. **Use when**: 需要把候选文献扩充到 ≥1200 篇并补齐可追溯 meta（survey pipeline 的 Stage C1，写作前置 evidence）。 **Skip if**: 已经有高质量 `papers/papers_raw.jsonl`（≥1200 且每条都有稳定标识+来源记录）。 **Network**: 可离线（靠 imports）；雪崩/在线检索需要网络。 **Guardrail**: 不允许编造论文；每条记录必须带稳定标识（arXiv id / DOI / 可信 URL）和 provenance；不写 output/ prose。

WILLOSCAR

research

academic

397

arxiv-search

Retrieve paper metadata from arXiv using keyword queries and save results as JSONL (`papers/papers_raw.jsonl`). **Trigger**: arXiv, arxiv, paper search, metadata retrieval, 文献检索, 论文检索, 拉取元数据, 离线导入. **Use when**: 需要一个初始论文集合（survey/snapshot 的 Stage C1），来源为 arXiv（在线检索或离线导入 export）。 **Skip if**: 已经有可用的 `papers/papers_raw.jsonl`，或数据源不是 arXiv。 **Network**: 在线检索需要网络；离线 `--input <export.*>` 不需要网络。 **Guardrail**: 只做 metadata；不要在 `output/` 写长 prose。

WILLOSCAR

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academic

397

evidence-binder

Bind addressable evidence IDs from `papers/evidence_bank.jsonl` to each subsection (H3), producing `outline/evidence_bindings.jsonl`. **Trigger**: evidence binder, evidence plan, section->evidence mapping, 证据绑定, evidence_id. **Use when**: `papers/evidence_bank.jsonl` exists and you want writer/auditor to use section-scoped evidence items (WebWeaver-style memory bank). **Skip if**: you are not doing evidence-first section-by-section writing. **Network**: none. **Guardrail**: NO PROSE; do not invent evidence; only select from the existing evidence bank.

WILLOSCAR

research

academic

397

novelty-matrix

Create a novelty/prior-work matrix comparing the submission’s contributions against related work (overlaps vs deltas). **Trigger**: novelty matrix, prior-work matrix, overlap/delta, 相关工作对比, 新颖性矩阵. **Use when**: peer review 中评估 novelty/positioning，需要把贡献与相关工作逐项对齐并写出差异点证据。 **Skip if**: 缺少 claims（先跑 `claims-extractor`）或你不打算做新颖性定位分析。 **Network**: none (retrieval of additional related work is out-of-scope unless provided). **Guardrail**: 明确 overlap 与 delta；尽量给出可追溯证据来源（来自稿件/引用/作者陈述）。

WILLOSCAR

research

academic

397

citation-injector

Apply a `citation-diversifier` budget report by injecting *in-scope* citations into an existing draft (NO NEW FACTS), so the run passes the global unique-citation gate without citation dumps. **Trigger**: citation injector, apply citation budget, inject citations, add citations safely, 引用注入, 按预算加引用, 引用增密. **Use when**: `output/CITATION_BUDGET_REPORT.md` exists and you need to raise *global* unique citations (or reduce over-reuse) before `draft-polisher` / `pipeline-auditor`. **Skip if**: you need more papers/citations upstream (fix C1/C2 mapping first), or `citations/ref.bib` is missing. **Network**: none. **Guardrail**: NO NEW FACTS; do not invent citations; only inject keys present in `citations/ref.bib`; keep injected citations within each H3’s allowed scope (via the budget report); avoid citation-dump paragraphs (embed cites per work).

WILLOSCAR

research

academic

397

claim-evidence-matrix

Build a section-by-section claim–evidence matrix (`outline/claim_evidence_matrix.md`) from the outline and paper notes. **Trigger**: claim–evidence matrix, evidence mapping, 证据矩阵, 主张-证据对齐. **Use when**: 写 prose 之前需要把每个小节的可检验主张与证据来源显式化（outline + paper notes 已就绪）。 **Skip if**: 缺少 `outline/outline.yml` 或 `papers/paper_notes.jsonl`。 **Network**: none. **Guardrail**: bullets-only（NO PROSE）；每个 claim 至少 2 个证据来源（或显式说明例外）。

WILLOSCAR

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academic

397

agent-survey-corpus

Download a small corpus of open-access arXiv survey/review PDFs about LLM agents and extract text for style learning. **Trigger**: agent survey corpus, ref corpus, download surveys, 学习综述写法, 下载 survey. **Use when**: you want to study how real agent surveys structure sections (6–8 H2), size subsections, and write evidence-backed comparisons. **Skip if**: you cannot download PDFs (no network) or you don't want local PDF files. **Network**: required. **Guardrail**: only download arXiv PDFs; store under `ref/` and keep large files out of git.

WILLOSCAR

research

academic

397

protocol-writer

Write a systematic review protocol into `output/PROTOCOL.md` (databases, queries, inclusion/exclusion, time window, extraction fields). **Trigger**: protocol, PRISMA, systematic review, inclusion/exclusion, 检索式, 纳入排除. **Use when**: systematic review pipeline 的起点（C1），需要先锁定 protocol 再开始 screening/extraction。 **Skip if**: 不是做 systematic review（或 protocol 已经锁定且不允许修改）。 **Network**: none. **Guardrail**: protocol 必须包含可执行的检索与筛选规则；需要 HUMAN 签字后才能进入 screening。

WILLOSCAR

research

academic

397

survey-visuals

Draft non-prose visuals artifacts (timeline, figure specs) for a survey, grounded in evidence and using citation keys from `citations/ref.bib`. **Trigger**: survey visuals, timeline, figures, visuals, 图表, 时间线, figure spec. **Use when**: survey 的 C4（NO PROSE），已有 outline + claim/evidence + citations，需要先把时间线/图规格落盘。 **Skip if**: 你只关心正文（可跳过）；或缺少 `citations/ref.bib`。 **Network**: none. **Guardrail**: NO PROSE；产物必须具体且可核对（含 citations），禁止遗留 TODO/SCAFFOLD。

WILLOSCAR

research

academic

397

dedupe-rank

Dedupe and rank a raw paper set (`papers/papers_raw.jsonl`) to produce `papers/papers_dedup.jsonl` and `papers/core_set.csv`. **Trigger**: dedupe, rank, core set, 去重, 排序, 精选论文, 核心集合. **Use when**: 检索后需要把广覆盖集合收敛成可管理的 core set（用于 taxonomy/outline/mapping）。 **Skip if**: 已经有人手工整理了稳定的 `papers/core_set.csv`（无需再次 churn）。 **Network**: none. **Guardrail**: 偏 deterministic；输出应可重复（稳定 paper_id、字段规范）。

WILLOSCAR

research

academic

397

paper-notes

Write structured notes for each paper in the core set into `papers/paper_notes.jsonl` (summary/method/results/limitations). **Trigger**: paper notes, structured notes, reading notes, 论文笔记, paper_notes.jsonl. **Use when**: survey 的 evidence 阶段（C3），已有 `papers/core_set.csv`（以及可选 fulltext），需要为后续 claims/citations/writing 准备可引用证据。 **Skip if**: 还没有 core set（先跑 `dedupe-rank`），或你只做极轻量 snapshot 不需要细粒度证据。 **Network**: none. **Guardrail**: 具体可核对（method/metrics/limitations），避免大量重复模板；保持结构化字段而非长 prose。

WILLOSCAR

research

academic

397

survey-seed-harvest

Identify survey/review papers in a retrieved set and extract taxonomy seeds into `outline/taxonomy.yml` (topics/subtopics/terminology). **Trigger**: survey seed harvest, taxonomy seeds, 从 survey 提 taxonomy, bootstrap taxonomy. **Use when**: retrieval/dedup 后想快速从已有 survey/review 论文中提取术语与主题结构，用于加速 `taxonomy-builder`。 **Skip if**: 已经有高质量 taxonomy（或你不想被 survey 既有框架限制）。 **Network**: none. **Guardrail**: 产物是 seed，必须经 `taxonomy-builder` 重写与对齐 scope；避免生成泛化占位节点。

WILLOSCAR

research

academic

397

draft-polisher

Audit-style editing pass for `output/DRAFT.md`: remove template boilerplate, improve coherence, and enforce citation anchoring. **Trigger**: polish draft, de-template, coherence pass, remove boilerplate, 润色, 去套话, 去重复, 统一术语. **Use when**: a first-pass draft exists but reads like scaffolding (repetition/ellipsis/template phrases) or needs a coherence pass before global review/LaTeX. **Skip if**: the draft already reads human-grade and passes quality gates; or prose is not approved in `DECISIONS.md`. **Network**: none. **Guardrail**: do not add/remove/invent citation keys; do not move citations across subsections; do not change claims beyond what existing citations support.

WILLOSCAR

research

academic

397

section-mapper

Map papers from the core set to each outline subsection and write `outline/mapping.tsv` with coverage tracking. **Trigger**: section mapper, mapping.tsv, coverage, paper-to-section mapping, 论文映射, 覆盖率. **Use when**: structure 阶段（C2），已有 `papers/core_set.csv` + `outline/outline.yml`，需要确保每小节有足够支持论文再进入 evidence/writing。 **Skip if**: 还没有 outline（先跑 `outline-builder`）或 core set 还没收敛。 **Network**: none. **Guardrail**: 覆盖率可审计（避免所有小节重复用同几篇）；为弱覆盖小节留下明确补救方向（扩 query / 合并小节）。

WILLOSCAR

research

academic

397

subsection-briefs

Build per-subsection writing briefs (NO PROSE) so later drafting is driven by evidence and checkable comparison axes (not outline placeholders). **Trigger**: subsection briefs, writing cards, intent cards, H3 briefs, scope_rule, axes, clusters, 写作意图卡, 小节卡片, 段落计划. **Use when**: `outline/outline.yml` + `outline/mapping.tsv` + `papers/paper_notes.jsonl` exist and you want section-by-section drafting without template leakage. **Skip if**: `outline/subsection_briefs.jsonl` already exists and is refined (no placeholders/ellipsis; axes+clusters+paragraph_plan are filled). **Network**: none. **Guardrail**: NO PROSE; do not invent papers; only reference `paper_id`/`bibkey` that exist in `papers/paper_notes.jsonl`.

WILLOSCAR

research

academic

397

global-reviewer

Global consistency review for survey drafts: terminology, cross-section coherence, and scope/citation hygiene. Writes `output/GLOBAL_REVIEW.md` and (optionally) applies safe edits to `output/DRAFT.md`. **Trigger**: global review, consistency check, coherence audit, 术语一致性, 全局回看, 章节呼应, 拷打 writer. **Use when**: Draft exists and you want a final evidence-first coherence pass before LaTeX/PDF. **Skip if**: You are still changing the outline/mapping/notes (do those first), or prose writing is not approved. **Network**: none. **Guardrail**: Do not invent facts or citations; do not add new citation keys; treat missing evidence as a failure signal.

WILLOSCAR

research

academic

397

citation-anchoring

Regression-check citation anchoring (citations stay in the same subsection) to prevent “polish drift” that breaks claim→evidence alignment. **Trigger**: citation anchoring, citation drift, regression, cite stability, 引用锚定, 引用漂移. **Use when**: after editing/polishing, you want to confirm citations did not migrate across `###` subsections. **Skip if**: you do not have a baseline anchor file yet. **Network**: none. **Guardrail**: analysis-only; do not edit content.

WILLOSCAR

research

academic

397

snapshot-writer

Write a 1-page literature snapshot (`output/SNAPSHOT.md`) from a small core set + a bullets-only outline. **Trigger**: snapshot, literature snapshot, 速览, 48h snapshot, one-page snapshot, SNAPSHOT.md. **Use when**: 你要在 24-48h 内交付一个“可读的研究速览”（bullet-first，含关键引用），而不是完整 survey。 **Skip if**: 你已经进入 evidence-first survey 写作（有 `outline/evidence_drafts.jsonl` / `citations/ref.bib` / `output/DRAFT.md`），应改用 `subsection-writer`/`prose-writer`。 **Network**: none. **Guardrail**: 不发明论文/引用；引用只来自 `papers/core_set.csv`（或同 workspace 的候选池）；不写长段落（避免“像综述生成器”）。

WILLOSCAR

research

academic

397

claims-extractor

Extract key claims, contributions, and assumptions from a paper/manuscript into `output/CLAIMS.md` with traceability to source locations. **Trigger**: claims extractor, extract claims, contributions, assumptions, peer review, 审稿, 主张提取. **Use when**: 审稿/评审或 evidence audit，需要把主张列表落盘并可追溯到原文位置（section/page/quote）。 **Skip if**: 没有可用的稿件/全文（例如缺少 `output/PAPER.md` 或等价文本）。 **Network**: none. **Guardrail**: 每条 claim 必须带可定位的 source pointer；区分 empirical vs conceptual claims。

WILLOSCAR

research

academic

397

prose-writer

Write `output/DRAFT.md` (or `output/SNAPSHOT.md`) from an approved outline and evidence packs, using only verified citation keys from `citations/ref.bib`. **Trigger**: write draft, prose writer, snapshot, survey writing, 写综述, 生成草稿, section-by-section drafting. **Use when**: structure is approved (`DECISIONS.md` has `Approve C2`) and evidence packs exist (`outline/subsection_briefs.jsonl`, `outline/evidence_drafts.jsonl`). **Skip if**: approvals are missing, or evidence packs are incomplete / scaffolded (missing-fields, TODO markers). **Network**: none. **Guardrail**: do not invent facts or citations; only cite keys present in `citations/ref.bib`; avoid pipeline-jargon leakage in final prose.

WILLOSCAR

research

academic

397

keyword-expansion

Expand and refine search keywords (synonyms, acronyms, exclusions) and update `queries.md`. **Trigger**: keyword expansion, synonyms, exclusions, queries.md, 关键词扩展, 同义词, 排除词. **Use when**: 检索覆盖不足/噪声过大，或主题别名很多，需要系统化扩展与收敛检索词。 **Skip if**: `queries.md` 已经能稳定检出覆盖面（无需扩大范围导致后续成本爆炸）。 **Network**: none. **Guardrail**: 保持可控的 query 数量；明确 exclusions；避免“无限扩展”。

WILLOSCAR

research

academic

397

rubric-writer

Write a rubric-based peer review report (`output/REVIEW.md`) using extracted claims and evidence gaps (novelty/soundness/clarity/impact). **Trigger**: rubric review, referee report, peer review write-up, 审稿报告, REVIEW.md. **Use when**: peer-review pipeline 的最后阶段（C3），已有 `output/CLAIMS.md` + `output/MISSING_EVIDENCE.md`（以及可选 novelty matrix）。 **Skip if**: 上游产物未就绪（claims/evidence gaps 缺失）或你不打算输出完整审稿报告。 **Network**: none. **Guardrail**: 给可执行建议（actionable feedback），并覆盖 novelty/soundness/clarity/impact；避免泛泛而谈。

WILLOSCAR

research

academic

397

anchor-sheet

Extract per-subsection “anchor facts” (NO PROSE) from evidence packs so the writer is forced to include concrete numbers/benchmarks/limitations instead of generic summaries. **Trigger**: anchor sheet, anchor facts, numeric anchors, evidence hooks, 写作锚点, 数字锚点, 证据钩子. **Use when**: `outline/evidence_drafts.jsonl` exists and you want stronger, evidence-anchored writing in `sections/*.md`. **Skip if**: evidence packs are incomplete (fix `evidence-draft` first). **Network**: none. **Guardrail**: NO PROSE; do not invent facts; only select from existing evidence snippets/highlights.

WILLOSCAR

research

academic

397

argument-selfloop

Argument self-loop: maintain an argument ledger + premise consistency report for drafted sections. **Trigger**: argument self-loop, argument chain, premise consistency, section self-check, paragraph contract, 论证自循环, 论证链路, 前提一致性, 段落论证动作. **Use when**: you are in C5 (PROSE allowed), `sections/*.md` exist, and you want to prevent “smooth but hollow” writing by enforcing argument moves + premise hygiene before merge. **Skip if**: you are pre-C2 (NO PROSE), or evidence packs are scaffolded/thin (route upstream to `evidence-selfloop` first). **Network**: none. **Guardrail**: do not invent facts; do not add/remove/move citation keys; do not move citations across subsections; the argument ledger is an intermediate artifact and must never be inserted into the paper.

WILLOSCAR

research

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