scientific-computing
371
chemical-structure-analysis
Analyze chemical structures from compound names to retrieve SMILES, molecular formulas, molecular weight, and LogP values.
SpectrAI-Initiative
research
sorting
stars
current ordering strategy
query
all entries
refine the visible subset
scientific-computing
371
cross-species-genomics
Cross-Species Comparative Genomics - Compare genomes across species: Ensembl compara, alignment, gene trees, and NCBI taxonomy. Use this skill for comparative genomics tasks involving get info compara species sets get alignment region get genetree member symbol get taxonomy. Combines 4 tools from 2 SCP server(s).
SpectrAI-Initiative
research
scientific-computing
371
protein-similarity-search
Protein Similarity Search - Search for similar proteins: extract sequence from PDB, search structures with FoldSeek, find homologs with STRING, and check UniProt. Use this skill for bioinformatics tasks involving extract pdb sequence foldseek search get best similarity hits between species search uniprotkb entries. Combines 4 tools from 3 SCP server(s).
SpectrAI-Initiative
research
scientific-computing
371
drugsda-peptide-sampling
Generate new peptide molecules sampling from the input peptide sequence.
SpectrAI-Initiative
research
scientific-computing
371
drugsda-rgroup-sampling
Generate new molecules sampling from the input scaffold.
SpectrAI-Initiative
research
scientific-computing
371
multiomics-integration
Multi-Omics Integration - Integrate multi-omics: gene expression, protein data, pathway enrichment, and metabolic pathways. Use this skill for multi-omics tasks involving get gene expression across cancers get uniprotkb entry by accession get functional enrichment kegg get. Combines 4 tools from 4 SCP server(s).
SpectrAI-Initiative
research
scientific-computing
371
nuclear-physics
Nuclear Physics Calculations - Nuclear physics: energy conversion MeV to J, calculate total power, photon rate, and error analysis. Use this skill for nuclear physics tasks involving convert energy MeV to J calculate total power calculate incident photon rate calculate absolute error. Combines 4 tools from 3 SCP server(s).
SpectrAI-Initiative
research
scientific-computing
371
energy-conversion
Energy Unit Conversion Pipeline - Convert between energy units and analyze: MeV to Joules, scientific notation, and error calculation. Use this skill for physics tasks involving convert energy MeV to J convert to scientific notation format scientific notation calculate absolute error. Combines 4 tools from 2 SCP server(s).
SpectrAI-Initiative
research
scientific-computing
371
mouse-model-analysis
Mouse Model Disease Analysis - Analyze mouse disease models: MouseMine search, NCBI mouse gene data, Ensembl cross-species comparison, and orthologs. Use this skill for model organisms tasks involving mousemine search get gene metadata by gene name get homology symbol get gene orthologs. Combines 4 tools from 3 SCP server(s).
SpectrAI-Initiative
research
scientific-computing
371
mutation-impact-analysis
Mutation Impact Analysis - Analyze mutation impact: predict structure, predict mutations from sequence and structure, and check variant effects with Ensembl VEP. Use this skill for molecular biology tasks involving pred protein structure esmfold zero shot sequence prediction predict zero shot structure get vep hgvs. Combines 4 tools from 3 SCP server(s).
SpectrAI-Initiative
research
scientific-computing
371
virus-genomics
Virus Genomics Analysis - Analyze virus genomics: NCBI virus dataset, annotation, taxonomy, and literature search. Use this skill for virology tasks involving get virus dataset report get virus annotation report get taxonomy search literature. Combines 4 tools from 2 SCP server(s).
SpectrAI-Initiative
research
scientific-computing
371
unit-conversion-nanoscale
Convert physical quantities and units at nanoscale for materials science and nanotechnology applications.
SpectrAI-Initiative
research
scientific-computing
371
uniprot-protein-retrieval
Retrieve protein sequences and functional information from UniProt database by protein name, enabling protein analysis and bioinformatics workflows.
SpectrAI-Initiative
research
scientific-computing
371
molecular-properties-calculation
Calculate basic molecular properties from SMILES including molecular weight, formula, atom counts, and exact mass.
SpectrAI-Initiative
research
scientific-computing
371
organism-classification
Organism Classification & Database - Classify organism: NCBI taxonomy, Ensembl taxonomy, ChEMBL organisms, and genome info. Use this skill for taxonomy tasks involving get taxonomy get taxonomy id get organism by id get genome dataset report by taxon. Combines 4 tools from 3 SCP server(s).
SpectrAI-Initiative
research
scientific-computing
369
ark-research
Research technical solutions by searching the web, examining GitHub repos, and gathering evidence. Use when exploring implementation options or evaluating technologies.
mckinsey
research
academic
367
ljg-xray-book
Deep structure extraction from books using the Epiplexity principle - maximizing computational investment to extract maximum learnable structure from any book.
lijigang
research
academic
366
academic-researcher
Academic research assistant for literature reviews, paper analysis, and scholarly writing.
LigphiDonk
research
academic
366
inno-deep-research
Comprehensive research assistant that synthesizes information from multiple sources with citations.
LigphiDonk
research
academic
366
paper-finder
Search existing paper notes by title, author, keyword, or research domain
LigphiDonk
research
academic
366
research-news
Daily paper recommendation workflow — search arXiv and Semantic Scholar, score and recommend papers
LigphiDonk
research
academic
366
paper-analyzer
Deep analysis of a single paper — generate structured notes with figures, evaluation, and knowledge graph updates
LigphiDonk
research
academic
366
inno-reference-audit
This skill provides reference guidance for citation verification in academic writing.
LigphiDonk
research
academic
366
inno-paper-writing
Creates formal academic research papers following IEEE/ACM formatting standards with proper structure, citations, and scholarly writing style.
LigphiDonk
research