computational-chemistry
115
proteomics-de
Differential protein abundance testing using MSstats, limma, proDA, and scipy/statsmodels for Python. Multiple testing correction with BH FDR.
TianGzlab
research
sorting
stars
current ordering strategy
query
all entries
refine the visible subset
computational-chemistry
115
sc-doublet-detection
Annotate putative doublets in single-cell RNA-seq data using Scrublet, DoubletDetection, DoubletFinder, scDblFinder, or scds. The wrapper preserves the current AnnData matrix semantics, standardizes output columns in `obs`, and exports a reusable figure/table gallery.
TianGzlab
research
computational-chemistry
115
proteomics-identification
Database search for peptide/protein identification using MaxQuant, MS-GF+, Comet, or Mascot.
TianGzlab
research
scientific-computing
115
detecting-emergent-patterns
Find breakthrough insights by forcing unrelated concepts together, detecting meta-patterns across domains, and discovering simplification cascades. When stuck on complex problems. When searching for innovative solutions. When same issue appears in different domains. When complexity feels excessive. When conventional approaches aren't working. When seeking radical simplification.
sandgardenhq
research
computational-chemistry
115
metabolomics-quantification
Feature quantification, missing value imputation, and normalization for metabolomics data.
TianGzlab
research
lab-tools
115
bulkrna-qc
Bulk RNA-seq count matrix quality control — library sizes, gene detection, sample correlation, outlier detection, CPM normalization.
TianGzlab
research
lab-tools
115
proteomics-ms-qc
Mass spectrometry raw data quality control using PTXQC, rawTools, or MSstatsQC.
TianGzlab
research
scientific-computing
115
metabolomics-de
Metabolomics differential analysis using univariate tests (t-test, FDR), multivariate methods (PCA, PLS-DA, OPLS-DA, sPLS-DA), Random Forest, and ROC analysis for biomarker discovery.
TianGzlab
research
scientific-computing
115
metabolomics-normalization
Metabolomics data normalization, scaling and transformation.
TianGzlab
research
scientific-computing
115
metabolomics-statistics
Statistical analysis for metabolomics — PCA, PLS-DA, clustering, and univariate tests.
TianGzlab
research
scientific-computing
115
metabolomics-xcms-preprocessing
XCMS3 workflow for LC-MS/GC-MS metabolomics preprocessing. Peak detection (CentWave/MatchedFilter), RT alignment (Obiwarp), correspondence, gap filling, and CAMERA adduct/isotope annotation.
TianGzlab
research
scientific-computing
115
orchestrator
Multi-omics query routing and pipeline orchestration across all OmicsClaw domains. Routes natural language queries to the correct analysis skill across spatial transcriptomics, single-cell omics, genomics, proteomics, and metabolomics.
TianGzlab
research
scientific-computing
115
proteomics-ptm
Post-translational modification analysis including phosphorylation, acetylation, and ubiquitination. Site localization, motif analysis, and quantitative PTM analysis with MSstatsPTM.
TianGzlab
research
scientific-computing
115
spatial-condition
Compare experimental conditions in spatial transcriptomics data using pseudobulk differential expression with method-aware PyDESeq2 or Wilcoxon testing and explicit replicate handling.
TianGzlab
research
scientific-computing
115
spatial-de
Differential expression and marker discovery for spatial transcriptomics using Scanpy Wilcoxon / t-test or sample-aware pseudobulk PyDESeq2.
TianGzlab
research
lab-tools
114
sample-module-setup
Sets up BMad Samples module in a project. Use when the user requests to 'install samples module', 'configure BMad Samples', or 'setup BMad Samples'.
bmad-code-org
research
astronomy-physics
113
antigravity-mcp
Use when Antigravity MCP is available locally and you want to query workspaces, check quota, run lightweight Antigravity asks, or generate images through the local antigravity-mcp-server.
NeverSight
research
computational-chemistry
113
cointegration-analysis
Cointegration testing for pairs trading using Engle-Granger, Johansen, and rolling stability analysis
NeverSight
research
computational-chemistry
113
token-holder-analysis
Token holder distribution, concentration metrics, insider detection, and supply analysis for Solana tokens
NeverSight
research
computational-chemistry
113
web-state-jotai
Atomic state management with auto-dependency tracking
NeverSight
research
computational-chemistry
113
gemini-watermark
Remove visible Gemini AI watermarks from images via reverse alpha blending. Use for cleaning Gemini-generated images, removing the star/sparkle logo watermark, batch watermark removal.
NeverSight
research