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Research

Scientific computing and academic tools.

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lab-tools
54

backseat-driver-testing

Testing strategies for Calva Backseat Driver MCP tools. Use when: Testing Backseat Driver, validating tool updates, testing structural editing workflows, verifying REPL evaluation with who-tracking, testing output log filtering, smoke testing after dep bumps, or debugging tool behavior. Covers all Backseat Driver tool categories: structural editing, REPL eval, symbol info, bracket balancing, and output log.

BetterThanTomorrow
BetterThanTomorrow
research
open
scientific-computing
53

causal-scientist

Causal inference specialist for causal discovery, counterfactual reasoning, and effect estimationUse when "causal inference, causal discovery, counterfactual, intervention effect, confounder, structural causal model, SCM, dowhy, causal graph, causal, dowhy, scm, dag, counterfactual, intervention, causalnex, confounding, ml-memory" mentioned.

omer-metin
omer-metin
research
open
astronomy-physics
53

calculator

Perform mathematical calculations and evaluate expressions

isLinXu
isLinXu
research
open
scientific-computing
53

synthetic-data

Patterns for generating synthetic data for ML training, testing, and privacy. Covers LLM-based generation, tabular synthesis, and quality validation. Use when "synthetic data, generate training data, fake data generation, data augmentation, SDV, Gretel, test data, privacy-preserving data, " mentioned.

omer-metin
omer-metin
research
open
astronomy-physics
53

orbital-mechanics

Use when computing orbits, planning maneuvers, propagating trajectories, or analyzing orbital perturbations for spacecraft or celestial bodies. Use when "orbit, trajectory, maneuver, delta-v, Hohmann, Keplerian, perturbation, J2, TLE, orbital elements, semi-major axis, eccentricity, inclination, RAAN, spacecraft propagation, Lambert solver, interplanetary, " mentioned.

omer-metin
omer-metin
research
open
astronomy-physics
53

antigravity-mcp

Use when Antigravity MCP is available locally and you want to query workspaces, check quota, run lightweight Antigravity asks, or generate images through the local antigravity-mcp-server.

ada20204
ada20204
research
open
astronomy-physics
53

ground-station-ops

Use when designing ground station networks, scheduling satellite contacts, processing telemetry, commanding spacecraft, or analyzing link budgets. Use when "ground station, satellite contact, pass prediction, AOS, LOS, telemetry, commanding, uplink, downlink, antenna tracking, link budget, G/T, EIRP, " mentioned.

omer-metin
omer-metin
research
open
astronomy-physics
53

space-data-processing

Use when processing satellite imagery, hyperspectral data, SAR imagery, or applying machine learning to remote sensing data for Earth observation. Use when "satellite imagery, remote sensing, Earth observation, optical imagery, hyperspectral, SAR, InSAR, NDVI, atmospheric correction, radiometric calibration, land cover classification, change detection, pan-sharpening, spectral unmixing, " mentioned.

omer-metin
omer-metin
research
open
astronomy-physics
53

spacecraft-systems

Use when designing or analyzing spacecraft subsystems including ADCS, power, thermal control, propulsion, communications, and command & data handling. Use when "spacecraft, satellite, ADCS, attitude control, reaction wheel, star tracker, solar array, battery, thermal control, radiator, MLI, propulsion, thruster, communications, link budget, C&DH, subsystem, " mentioned.

omer-metin
omer-metin
research
open
astronomy-physics
53

hecras-parse-compute-messages

Parse HEC-RAS compute output from HDF files to extract execution status, diagnostic messages, and performance metrics. Converts raw computation messages into structured diagnostics for workflow orchestration. Use when checking plan completion status, extracting compute messages, diagnosing execution failures, analyzing runtime performance, or interpreting HEC-RAS error codes. Keywords: compute messages, execution status, plan complete, runtime, performance, error diagnostics, HEC-RAS output, simulation results, warnings, convergence, instability, time step, iteration.

gpt-cmdr
gpt-cmdr
research
open
scientific-computing
53

protein-structure

Patterns for protein structure prediction using AlphaFold2/ColabFold, structural analysis, model quality assessment, and integration with experimental data. Covers best practices and critical interpretation of prediction confidence metrics. Use when ", " mentioned.

omer-metin
omer-metin
research
open
computational-chemistry
53

clinical-trial-analysis

Patterns for designing and analyzing clinical trials, including survival analysis, endpoint selection, sample size calculation, interim analyses, and regulatory considerations. Covers FDA/EMA guidelines and modern adaptive designs. Use when ", " mentioned.

omer-metin
omer-metin
research
open
computational-chemistry
53

hivemind-architect-strategist

Core skill for the hiveminder agent. Provides scanning, analysis, and synthesis capabilities for architecture review and strategic planning. Research-fronted and evidence-oriented approaches for high-quality decision making.

shynlee04
shynlee04
research
open
computational-chemistry
53

drug-discovery-informatics

Patterns for computer-aided drug discovery including virtual screening, molecular docking, ADMET prediction, lead optimization, and integration with AI/ML methods. Covers both structure-based and ligand-based approaches. Use when ", " mentioned.

omer-metin
omer-metin
research
open
lab-tools
53

lab-automation

Patterns for laboratory automation including liquid handling robotics, LIMS integration, protocol development, quality control, and high-throughput workflows. Covers both open-source (Opentrons) and commercial platforms. Use when ", " mentioned.

omer-metin
omer-metin
research
open
lab-tools
53

data-reproducibility

Infrastructure and practices for reproducible computational research. Covers environment management, data versioning, code documentation, and sharing protocols that enable others to reproduce your results. Use when ", " mentioned.

omer-metin
omer-metin
research
open
scientific-computing
53

scientific-method

The scientific method applied to computational research, data science, and experimental software engineering. Covers hypothesis formulation, experimental design, controls, reproducibility, and avoiding common methodological pitfalls like p-hacking, HARKing, and confirmation bias. Use when ", " mentioned.

omer-metin
omer-metin
research
open
scientific-computing
53

physics-simulation

Patterns for physics-based simulation including numerical integration, rigid body dynamics, fluid simulation, finite element methods, and multi-physics coupling. Covers accuracy, stability, and performance. Use when ", " mentioned.

omer-metin
omer-metin
research
open
scientific-computing
53

agent-based-modeling

Design and implement agent-based models (ABM) for simulating complex systems with emergent behavior from individual agent interactions. Use when "agent-based, multi-agent, emergent behavior, swarm simulation, social simulation, crowd modeling, population dynamics, individual-based, " mentioned.

omer-metin
omer-metin
research
open
scientific-computing
53

research-ai-tools

Master the AI tools that accelerate research and information gathering. From market research to academic analysis, find insights faster and make better decisions. Use when "research, find information, academic papers, market research, competitive intelligence, fact check, research, information, analysis, academic, market-research" mentioned.

omer-metin
omer-metin
research
open
scientific-computing
53

monte-carlo

Design and implement Monte Carlo methods for uncertainty quantification, risk analysis, and probabilistic simulations across scientific and financial domains. Use when "monte carlo, random sampling, uncertainty quantification, risk analysis, stochastic simulation, MCMC, variance reduction, probabilistic, " mentioned.

omer-metin
omer-metin
research
open
computational-chemistry
52

mind-clone

Activate a Cognitive Digital Twin. Can simulate a custom subject (via core/ directory) OR load pre-installed celebrity/expert personas (from personas/ directory).

yzfly
yzfly
research
open
astronomy-physics
52

day-night-cycle

Time progression, directional light rotation, and event triggers for dawn and dusk.

nlelouche
nlelouche
research
open
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