lab-tools
40
testing-fixtures
Test fixture patterns — factories, builders, seeders, snapshot testing, and test data management.
InugamiDev
research
sorting
stars
current ordering strategy
query
all entries
refine the visible subset
lab-tools
40
gsd-verify
Goal-backward verification — verify from must-haves backward to artifacts, detect stubs and regressions
InugamiDev
research
scientific-computing
40
text-analyst
Computational text analysis for sociology research using R or Python. Guides you through topic models, sentiment analysis, classification, and embeddings with systematic validation. Supports both traditional (LDA, STM) and neural (BERT, BERTopic) methods.
nealcaren
research
scientific-computing
40
remotion-animation
Remotion animation patterns — spring physics, interpolate, Easing curves, timing, stagger, enter/exit, and complex motion sequences
InugamiDev
research
academic
39
longevity-scholar
This skill should be used when users explicitly request academic papers, recent research, most cited research, or scholarly articles about longevity, aging, lifespan extension, or related topics. Triggers on phrases like "find papers on", "latest research about", "most cited studies on", or "academic literature about" in the context of longevity.
bio-xyz
research
scientific-computing
39
lab-review
Cross-reference lab results from sundhed.dk against current PubMed and medRxiv research on optimal ranges. Generates a report comparing your values to the latest evidence-based guidelines, meta-analyses, and preprints.
mikkelkrogsholm
research
astronomy-physics
39
gps-msg-test
Test GPS messages from a TOML file using satpulsetool
jclark
research
astronomy-physics
39
geopandas
Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with geographic data for spatial analysis, geometric operations, coordinate transformations, spatial joins, overlay operations, choropleth mapping, or any task involving reading/writing/analyzing vector geographic data. Supports PostGIS databases, interactive maps, and integration with matplotlib/folium/cartopy. Use for tasks like buffer analysis, spatial joins between datasets, dissolving boundaries, clipping data, calculating areas/distances, reprojecting coordinate systems, creating maps, or converting between spatial file formats.
lingxling
research
astronomy-physics
39
geomaster
Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth observation, and 30+ scientific domains. Supports satellite imagery processing (Sentinel, Landsat, MODIS, SAR, hyperspectral), vector and raster data operations, spatial statistics, point cloud processing, network analysis, cloud-native workflows (STAC, COG, Planetary Computer), and 8 programming languages (Python, R, Julia, JavaScript, C++, Java, Go, Rust) with 500+ code examples. Use for remote sensing workflows, GIS analysis, spatial ML, Earth observation data processing, terrain analysis, hydrological modeling, marine spatial analysis, atmospheric science, and any geospatial computation task.
lingxling
research
astronomy-physics
39
astropy
Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve coordinate transformations, unit conversions, FITS file manipulation, cosmological distance calculations, time scale conversions, or astronomical data processing.
lingxling
research
astronomy-physics
39
omero-integration
Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
lingxling
research
computational-chemistry
39
imaging-data-commons
Query and download public cancer imaging data from NCI Imaging Data Commons using idc-index. Use for accessing large-scale radiology (CT, MR, PET) and pathology datasets for AI training or research. No authentication required. Query by metadata, visualize in browser, check licenses.
lingxling
research
computational-chemistry
39
rowan
Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction, conformer and tautomer ensembles, docking and analogue docking, protein-ligand cofolding, MSA generation, molecular dynamics, permeability, descriptor workflows, and related small-molecule or protein modeling tasks. Ideal for programmatic batch screening, multi-step chemistry pipelines, and workflows that would otherwise require maintaining local HPC/GPU infrastructure.
lingxling
research
computational-chemistry
39
fda-database
Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identification (UNII), for FDA regulatory data analysis and safety research.
lingxling
research
computational-chemistry
39
torch-geometric
Guide for building Graph Neural Networks with PyTorch Geometric (PyG). Use this skill whenever the user asks about graph neural networks, GNNs, node classification, link prediction, graph classification, message passing networks, heterogeneous graphs, neighbor sampling, or any task involving torch_geometric / PyG. Also trigger when you see imports from torch_geometric, or the user mentions graph convolutions (GCN, GAT, GraphSAGE, GIN), graph data structures, or working with relational/network data. Even if the user just says 'graph learning' or 'geometric deep learning', use this skill.
lingxling
research
computational-chemistry
39
stable-baselines3
Production-ready reinforcement learning algorithms (PPO, SAC, DQN, TD3, DDPG, A2C) with scikit-learn-like API. Use for standard RL experiments, quick prototyping, and well-documented algorithm implementations. Best for single-agent RL with Gymnasium environments. For high-performance parallel training, multi-agent systems, or custom vectorized environments, use pufferlib instead.
lingxling
research
computational-chemistry
39
zinc-database
Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for docking, analog discovery, for virtual screening and drug discovery.
lingxling
research
computational-chemistry
39
drugbank-database
Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, targets, pathways, chemical structures, and pharmacology data. This skill should be used when working with pharmaceutical data, drug discovery research, pharmacology studies, drug-drug interaction analysis, target identification, chemical similarity searches, ADMET predictions, or any task requiring detailed drug and drug target information from DrugBank.
lingxling
research
computational-chemistry
39
jaspar-database
Query JASPAR for transcription factor binding site (TFBS) profiles (PWMs/PFMs). Search by TF name, species, or class; scan DNA sequences for TF binding sites; compare matrices; essential for regulatory genomics, motif analysis, and GWAS regulatory variant interpretation.
lingxling
research
computational-chemistry
39
histolab
Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, stain normalization for H&E images. Best for simple pipelines, dataset preparation, quick tile-based analysis. For advanced spatial proteomics, multiplexed imaging, or deep learning pipelines use pathml.
lingxling
research
scientific-computing
39
paper-review-helper
Copilot for scientific paper review. Use when reviewing a research paper (PDF/LaTeX), guiding section-by-section analysis, logging issues, and generating structured review responses.
caidish
research