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Research

Scientific computing and academic tools.

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lab-tools
33

monitor

Smart Blog 品質監控與月度比較。追蹤文章分數變化,產出 delta 報告。 資料儲存在 docs/monitor/,JSON 格式可供其他 skill 共用。 Use when user says "monitor", "監控", "追蹤", "compare scores", "monthly report", "月報", "品質趨勢", "smart-blog monitor", "delta".

rainday
rainday
research
open
lab-tools
33

telemetry-sanitized-skill-invocation

Record SkillTool usage with sanitized telemetry fields so built-in, bundled, and custom skills are distinguished while avoiding PII leakage.

ychampion
ychampion
research
open
lab-tools
33

e2e-test

Run end-to-end tests for easy-db-lab. Automatically detects what to test based on code changes in the current branch, or allows manual specification of test scope. Use when validating changes, running CI tests, or verifying full system functionality. Runs in background, reports results, and automatically debugs failures.

rustyrazorblade
rustyrazorblade
research
open
lab-tools
33

agent-test

Dynamic end-to-end test runner for easy-db-lab that calls easy-db-lab commands directly. Analyzes branch changes, proposes a test plan, executes commands step-by-step, and investigates failures inline. Use instead of bin/end-to-end-test when you want intelligent, adaptive testing with real-time debugging.

rustyrazorblade
rustyrazorblade
research
open
lab-tools
33

telemetry-sanitized-skill-invocation

Record SkillTool usage with sanitized telemetry fields so built-in, bundled, and custom skills are distinguished while avoiding PII leakage.

ychampion
ychampion
research
open
lab-tools
33

time-based-microcompact-trigger

Fall back to time-based microcompaction when the idle gap exceeds the configured threshold and directly clear the oldest compactable tool results.

ychampion
ychampion
research
open
lab-tools
33

gestures

watchOS gesture patterns: Digital Crown, long press, swipe-to-dismiss, tap, watch-appropriate interactions. Use when implementing watchOS-specific patterns related to gestures.

moasq
moasq
research
open
lab-tools
33

time-based-microcompact-trigger

Fall back to time-based microcompaction when the idle gap exceeds the configured threshold and directly clear the oldest compactable tool results.

ychampion
ychampion
research
open
lab-tools
33

telemetry-terminology-similarity

Score telemetry field name similarity across syntactic, taxonomic, and semantic layers. TRIGGERS - field name collision, terminology overlap, schema dedup, naming inconsistency, telemetry naming, log field similarity.

terrylica
terrylica
research
open
scientific-computing
33

smiles-to-iupac

将 SMILES 字符串转换为 IUPAC 化学名称。使用 PubChem、NCI/CADD、STOUT、RDKit-InChI 多种方法智能转换。

InternScience
InternScience
research
open
scientific-computing
33

mol-2d-viewer

将 SMILES 或化学名称转换为分子 2D 结构图。支持普通分子和聚合物 2D 结构绘制。

InternScience
InternScience
research
open
scientific-computing
33

mol-image-to-smiles

将分子结构图片转换为 SMILES 字符串。使用 DECIMER 和 MolNextR 模型进行图像识别。

InternScience
InternScience
research
open
scientific-computing
32

biomni

Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation, rare disease diagnosis, or lab protocol optimization. Leverages LLM reasoning with code execution and integrated biomedical databases.

lifangda
lifangda
research
open
computational-chemistry
32

pyhealth

Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, drug recommendation), medical coding systems (ICD, NDC, ATC), physiological signals (EEG, ECG), healthcare datasets (MIMIC-III/IV, eICU, OMOP), or implementing deep learning models for healthcare applications (RETAIN, SafeDrug, Transformer, GNN).

lifangda
lifangda
research
open
scientific-computing
32

neurokit2

Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements. Applicable for heart rate variability analysis, event-related potentials, complexity measures, autonomic nervous system assessment, psychophysiology research, and multi-modal physiological signal integration.

lifangda
lifangda
research
open
scientific-computing
32

aeon

Time series machine learning toolkit for classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use this skill when working with temporal data, performing time series analysis, building predictive models on sequential data, or implementing workflows that involve distance metrics (DTW), transformations (ROCKET, Catch22), or deep learning for time series. Applicable for tasks like ECG classification, stock price forecasting, sensor anomaly detection, or activity recognition from wearable devices.

lifangda
lifangda
research
open
scientific-computing
32

pydeseq2

Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.

lifangda
lifangda
research
open
scientific-computing
32

scvi-tools

This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential expression, cell type annotation, multimodal integration, and spatial analysis tasks.

lifangda
lifangda
research
open
scientific-computing
32

tooluniverse

Use this skill when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery. This skill provides access to 600+ scientific tools including machine learning models, datasets, APIs, and analysis packages. Use when searching for scientific tools, executing computational biology workflows, composing multi-step research pipelines, accessing databases like OpenTargets/PubChem/UniProt/PDB/ChEMBL, performing tool discovery for research tasks, or integrating scientific computational resources into LLM workflows.

lifangda
lifangda
research
open
scientific-computing
32

deepchem

Molecular machine learning toolkit. Property prediction (ADMET, toxicity), GNNs (GCN, MPNN), MoleculeNet benchmarks, pretrained models, featurization, for drug discovery ML.

lifangda
lifangda
research
open
lab-tools
32

pylabrobot

Laboratory automation toolkit for controlling liquid handlers, plate readers, pumps, heater shakers, incubators, centrifuges, and analytical equipment. Use this skill when automating laboratory workflows, programming liquid handling robots (Hamilton STAR, Opentrons OT-2, Tecan EVO), integrating lab equipment, managing deck layouts and resources (plates, tips, containers), reading plates, or creating reproducible laboratory protocols. Applicable for both simulated protocols and physical hardware control.

lifangda
lifangda
research
open
scientific-computing
32

benchling-integration

Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.

lifangda
lifangda
research
open
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