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Research

Scientific computing and academic tools.

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lab-tools
31

autostar

Generalised autonomous optimisation loop — soft RLVR for any artifact a user can measure. Use this skill whenever a user wants to iteratively improve an artifact — code, prompts, documents, configs, designs, content — by running structured experiments, evaluating results against a multi-dimensional rubric, and learning from each attempt. Triggers include: "optimise this", "keep improving until it's good", "run experiments on", "autoresearch", "iterate on this overnight", "try different approaches and pick the best", or any request implying repeated evaluate-and-improve cycles. Also use when the user wants to improve a system prompt, a data pipeline, a writing style, or any artifact where quality can be decomposed into measurable tracks. For inference optimisation tasks (model latency, throughput, quantization, GPU deployment), a* delegates the low-level tuning to AITune while maintaining quality tracking and learning.

chrisvoncsefalvay
chrisvoncsefalvay
research
open
lab-tools
31

calc-sample-size

Interactive sample size calculator for medical research. Decision-tree guided test selection, reproducible R/Python code, effect size interpretation, and IRB-ready justification text. Supports diagnostic accuracy, agreement, proportions, continuous outcomes, survival, ANOVA, logistic regression, and non-inferiority/equivalence designs.

Aperivue
Aperivue
research
open
scientific-computing
31

biorxiv-search

Search bioRxiv biology preprints with natural language queries. Semantic search powered by Valyu.

yorkeccak
yorkeccak
research
open
scientific-computing
31

chembl-search

Search ChEMBL bioactive molecules database with natural language queries. Find compounds and assay data with Valyu semantic search.

yorkeccak
yorkeccak
research
open
academic
30

extracting-keywords

Extract keywords from documents using YAKE algorithm with support for 34 languages (Arabic to Chinese). Use when users request keyword extraction, key terms, topic identification, content summarization, or document analysis. Includes domain-specific stopwords for AI/ML and life sciences. Optional deeper extraction mode (n=2+n=3 combined) for comprehensive coverage.

oaustegard
oaustegard
research
open
academic
30

reviewing-ai-papers

Analyze AI/ML technical content (papers, articles, blog posts) and extract actionable insights filtered through enterprise AI engineering lens. Use when user provides URL/document for AI/ML content analysis, asks to "review this paper", or mentions technical content in domains like RAG, embeddings, fine-tuning, prompt engineering, LLM deployment.

oaustegard
oaustegard
research
open
academic
30

web-search

web search API. Use when you need current information, documentation, or to research topics on the web.

richardgill
richardgill
research
open
academic
30

updating-knowledge

Systematic research methodology for building comprehensive, current knowledge on any topic. Requires web_search tool. Use when questions require thorough investigation, recent developments post-cutoff, synthesis across multiple sources, or when Claude's knowledge may be outdated or incomplete. Triggered by "Research", "Investigate", "What's current on", "Latest info on", complex queries needing validation, or technical topics with recent changes.

oaustegard
oaustegard
research
open
lab-tools
30

validate-devproxy-sample

This skill should be used when the user asks to "validate a sample", "check my sample", "review before submitting", "verify sample structure", or needs to validate a Dev Proxy sample for correctness before submission.

pnp
pnp
research
open
lab-tools
30

agent-evaluation

Testing and benchmarking LLM agents including behavioral testing, capability assessment, reliability metrics, and production monitoring—where even top agents achieve less than 50% on real-world benchmarks Use when: agent testing, agent evaluation, benchmark agents, agent reliability, test agent.

cleodin
cleodin
research
open
lab-tools
30

artifact-auditor

Audit experiment artifact folders for completeness, schema consistency, and promotion traceability across single and grid runs.

Open-Quant
Open-Quant
research
open
lab-tools
30

parity-check

Verify parity between notebook-like pipeline execution and scripted experiment workflows so research findings are reproducible.

Open-Quant
Open-Quant
research
open
scientific-computing
30

scientific-eda

Defensive exploratory data analysis for scientific data (CSV, FASTA, etc.). Context-first, human-guided; one plot at a time, ask why before executing, append-only journal per session, scripts with PEP723 and uv run, WebP plots. Use when opening data files for EDA or when the user wants guided scientific data exploration.

ericmjl
ericmjl
research
open
scientific-computing
30

ml-experimentation

Conduct machine learning experiments from planning through evaluation and report writing. Use when running ML experiments, testing hypotheses, training models, or writing up results. Covers single-hypothesis scoping, fast iteration loops, targeted logging, JOURNAL.md protocol, data-backed diagnostic plots, and scientific report writing.

ericmjl
ericmjl
research
open
academic
29

memex-search

Search, filter, and retrieve Claude/Codex history indexed by the memex CLI. Use when the user wants to index history, run lexical/semantic/hybrid search, fetch full transcripts, or produce LLM-friendly JSON output for RAG.

nicosuave
nicosuave
research
open
academic
29

automem-search

Search, filter, and retrieve Claude/Codex history indexed by the automem CLI. Use when the user wants to index history, run lexical/semantic/hybrid search, fetch full transcripts, or produce LLM-friendly JSON output for RAG.

nicosuave
nicosuave
research
open
academic
29

remembering-conversations

Search previous Claude Code conversations for facts, patterns, decisions, and context using semantic or text search

obra
obra
research
open
scientific-computing
29

research-synthesis

Guide when to use built-in tools (WebFetch, WebSearch) and MCP servers (Parallel Search, Perplexity, Context7) for research. Synthesize findings into narrative for braindump. Use when gathering data, examples, or citations for blog posts.

dhruvbaldawa
dhruvbaldawa
research
open
academic
29

gardening-skills-wiki

Maintain skills wiki health - check links, naming, cross-references, and coverage

obra
obra
research
open
lab-tools
29

mlflow

Open-source platform for managing the ML lifecycle. Track experiments with metrics and parameters, register and version models, deploy models to various targets, and build reproducible ML pipelines. Integrates with all major ML frameworks.

TerminalSkills
TerminalSkills
research
open
lab-tools
29

ab-test-setup

When the user wants to plan, design, or implement an A/B test or experiment. Also use when the user mentions "A/B test," "split test," "experiment," "test this change," "variant copy," "multivariate test," or "hypothesis." For tracking implementation, see analytics-tracking.

TerminalSkills
TerminalSkills
research
open
lab-tools
29

clearml

Expert guidance for ClearML, the open-source MLOps platform for experiment tracking, pipeline orchestration, data management, and model deployment. Helps developers set up ML experiment tracking with minimal code, build reproducible pipelines, and manage the full ML lifecycle from training to serving.

TerminalSkills
TerminalSkills
research
open
lab-tools
29

rlm-memory

Long-term memory persistence for RLM using Daytona durable volume storage. Use when storing, recalling, listing, or searching data that persists across sandbox sessions in the daytona_pilot runtime.

Qredence
Qredence
research
open
lab-tools
29

commonplace-connect

Discover connections for a single note. Saves a connection report to the active workshop and does not mutate KB files. Use with a note path or note name.

zby
zby
research
open
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