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Research

Scientific computing and academic tools.

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scientific-computing
12

astrophysics-analysis

This skill should be used when the user asks to "analyze astronomical data", "process FITS files", "create sky maps", "work with cosmological simulations", "fit spectral data", "calculate redshifts", "analyze light curves", "work with astronomical catalogs", "perform astrometry", "process images from telescopes", or mentions astronomical instruments, surveys, or astrophysical phenomena. Provides guidance for scientific astrophysics workflows and best practices.

fundamental-physics
fundamental-physics
research
open
bioinformatics
12

gcell-dna

DNA sequence and motif analysis using gcell. Use this skill when users ask about: - Loading and manipulating DNA sequences - Genome assembly access (hg38, hg19, mm10) - Motif scanning with HOCOMOCO motifs - Working with genomic regions (BED, narrowPeak files) - Transcription factor binding site prediction Triggers: DNA sequence, motif scanning, HOCOMOCO, genomic regions, BED file, narrowPeak, genome, transcription factor binding

GET-Foundation
GET-Foundation
research
open
scientific-computing
12

gcell-protein

Protein structure and interaction analysis using gcell. Use this skill when users ask about: - Protein sequences from gene names - AlphaFold2 structure predictions and pLDDT scores - UniProt protein information - 3D protein structure visualization - Protein-protein interactions (STRING database) Triggers: protein structure, AlphaFold, pLDDT, UniProt, protein sequence, 3D structure, protein interaction, STRING

GET-Foundation
GET-Foundation
research
open
scientific-computing
12

gcell-chipatlas

ChIP-Atlas epigenome data query using gcell. Use this skill when users ask about: - Finding ChIP-seq, ATAC-seq, or DNase-seq experiments - Searching for transcription factor binding data - Finding histone modification data (H3K27ac, H3K4me3, etc.) - Querying epigenome data by cell type or tissue - Downloading peak files or BigWig coverage data - Enrichment analysis for genomic regions or gene lists Triggers: ChIP-seq, ChIP-Atlas, ATAC-seq, DNase-seq, histone modification, H3K27ac, H3K4me3, transcription factor binding, epigenome, peak data, BigWig, enrichment analysis

GET-Foundation
GET-Foundation
research
open
scientific-computing
12

gcell-gene

Gene annotations and TSS analysis using gcell. Use this skill when users ask about: - GENCODE gene annotations - Transcription start sites (TSS) - Gene coordinates and metadata - Transcript information - Querying genes by genomic region Triggers: gene annotation, GENCODE, TSS, transcription start site, gene coordinates, transcript, GTF

GET-Foundation
GET-Foundation
research
open
scientific-computing
12

gcell-causal

Causal network analysis using gcell. Use this skill when users ask about: - Inferring causal relationships from expression data - LiNGAM causal discovery algorithm - Regulatory network construction - Visualizing causal/regulatory networks Triggers: causal network, LiNGAM, causal inference, regulatory network, causal discovery, gene regulatory network

GET-Foundation
GET-Foundation
research
open
scientific-computing
12

genomics

Genomics and transcriptomics analysis strategies

justaddcoffee
justaddcoffee
research
open
scientific-computing
12

structural-biology

Structural biology analysis including protein structure validation, AlphaFold interpretation, and structural comparisons

justaddcoffee
justaddcoffee
research
open
scientific-computing
12

metabolomics

Metabolomics-specific analysis strategies and domain knowledge

justaddcoffee
justaddcoffee
research
open
lab-tools
12

nist-compliance

NIST 800-53r5 control implementation, tagging, evidence collection, and compliance automation for security frameworks

williamzujkowski
williamzujkowski
research
open
lab-tools
12

eda-drc

Design validation and review. Run DRC/ERC checks, verify against constraints, check component availability, and prepare comprehensive validation reports.

l3wi
l3wi
research
open
astronomy-physics
12

reporting-chest-radiographs

Structures systematic chest X-ray interpretation with standardized reporting and critical findings communication. Use when reading chest X-rays, creating radiology reports, or documenting CXR findings.

CaseMark
CaseMark
research
open
astronomy-physics
12

managing-pulmonary-hypertension

Structures PH evaluation with right heart catheterization interpretation and treatment classification. Use when evaluating pulmonary hypertension, interpreting RHC data, or classifying PH by WHO group.

CaseMark
CaseMark
research
open
astronomy-physics
12

janus-analyzer-skill

Use this skill for Janus requests that ask what to measure, how to measure it, which analyzer should answer it, or how to implement or adjust source-aware analysis for Mythic or Ghostwriter telemetry.

SpecterOps
SpecterOps
research
open
astronomy-physics
12

interpreting-fetal-monitoring

Interprets electronic fetal monitoring using NICHD nomenclature with category classification and intervention criteria. Use when reading fetal heart tracings, classifying EFM patterns, or documenting intrapartum monitoring.

CaseMark
CaseMark
research
open
astronomy-physics
12

analyzing-alternative-data-signals

Evaluates alternative data sources including satellite, NLP sentiment, web scraping, and geolocation for alpha signal generation. Use when analyzing alt data, evaluating new data sources, or integrating non-traditional signals.

CaseMark
CaseMark
research
open
astronomy-physics
12

weather-helper

A safe skill that fetches weather data

elliotllliu
elliotllliu
research
open
astronomy-physics
12

orbital-mechanics

Use when computing orbits, planning maneuvers, propagating trajectories, or analyzing orbital perturbations for spacecraft or celestial bodies. Use when "orbit, trajectory, maneuver, delta-v, Hohmann, Keplerian, perturbation, J2, TLE, orbital elements, semi-major axis, eccentricity, inclination, RAAN, spacecraft propagation, Lambert solver, interplanetary, " mentioned.

Supraforge
Supraforge
research
open
astronomy-physics
12

image-processing

Process, transform, and analyze images using common operations

Supraforge
Supraforge
research
open
astronomy-physics
12

astropy

Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve coordinate transformations, unit conversions, FITS file manipulation, cosmological distance calculations, time scale conversions, or astronomical data processing.

Supraforge
Supraforge
research
open
astronomy-physics
12

swissweather

Get current weather and forecasts from MeteoSwiss (official Swiss weather service). Use when querying Swiss weather data, local measurements from Swiss weather stations, or Swiss-specific forecasts. Provides real-time measurements (temperature, humidity, wind, precipitation, pressure) from 100+ Swiss stations and multi-day forecasts by postal code. Ideal for Swiss locations - more accurate than generic weather services for Switzerland.

Supraforge
Supraforge
research
open
astronomy-physics
12

unsplash

Access free high-quality stock photos on Unsplash - search, download, and manage photo collections for projects

Supraforge
Supraforge
research
open
astronomy-physics
12

aviation-weather

Fetch aviation weather data (METAR, TAF, PIREPs) from aviationweather.gov. Use for flight planning, weather briefings, checking airport conditions, or any pilot-related weather queries. Triggers on "METAR", "TAF", "flight weather", "airport weather", "aviation weather", "pilot report", "PIREP", or specific ICAO codes.

Supraforge
Supraforge
research
open
astronomy-physics
12

ground-station-ops

Use when designing ground station networks, scheduling satellite contacts, processing telemetry, commanding spacecraft, or analyzing link budgets. Use when "ground station, satellite contact, pass prediction, AOS, LOS, telemetry, commanding, uplink, downlink, antenna tracking, link budget, G/T, EIRP, " mentioned.

Supraforge
Supraforge
research
open
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