This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.
Web search via Kagi. Use when specifically asked to search Kagi, or when needing to find current information, documentation, facts, or web content. Returns search results and Quick Answers.
Routes C3 architecture requests and audits existing C3 documentation for consistency. Use when the user asks to "audit architecture", "validate C3", "check C3 docs", or when no .c3/ directory exists (routes to onboarding). Routes navigation to c3-navigator agent, changes to c3-orchestrator agent.
紧急求救 - 飞船坠毁后与Stella的首次联系,帮助她评估损伤并制定初步生存计划
奇异植物 - Stella深入研究盖亚星球的植物生态,发现既美丽又危险的外星植被,并尝试找到可利用的资源
洞穴探险 - Stella发现一个深邃的洞穴系统,深入探索发现bioluminescent晶体、地下水源和神秘的古老痕迹
古代遗迹 - Stella深入探索盖亚星球的古代文明遗迹,解开失落文明的秘密
信号塔修复 - Stella尝试修复或建造信号发射装置,希望联系地球或发送求救信号
Use Unpaywall API to find free full-text versions of paywalled papers
Main orchestration workflow for systematic literature research - search, evaluate, traverse, synthesize
Expert knowledge of research grant compliance requirements, deliverables tracking, and funder expectations. Use when reviewing work against grant specifications, preparing progress reports, or ensuring alignment with funding requirements from NSF, NIH, EU, and other agencies.
Use when the user mentions 'INSPIRE', 'INSPIRE-HEP', 'inspirehep', or asks to search high-energy physics literature, find HEP papers, get citation counts, or retrieve BibTeX from INSPIRE. Specializes in particle physics, quantum field theory, and related fields.
Expert knowledge of academic writing standards for peer-reviewed papers, including citation integrity, style compliance, clarity, and scientific writing best practices. Use when reviewing or editing academic manuscripts, papers, or research documentation.
Search the user's local Zotero library, find related papers via Semantic Scholar, and discover citations/references. **Claude only** - this skill requires a local Zotero instance and access to a port on localhost. Use when the user asks to search their Zotero library, find papers on a topic, explore citations of a paper, or find related literature. Supports cross-referencing Semantic Scholar results against the local library.
Use when the user mentions 'arxiv' or asks to find, search for, or download arxiv papers (by arxiv ID, author name, or topic), get paper source code, or retrieve LaTeX files from arxiv. Can search for papers to find arxiv IDs when only author/topic is provided, then download them. Prefer source format over PDF.
Search recent X/Twitter posts by query. Returns RAW TWEETS (last 7 days). Use when user asks "search X for", "find tweets about", "what are people saying about", "Twitter search", "raw tweets about". For AI summaries/sentiment, use x-research instead. Requires X_BEARER_TOKEN.
Introduction to literature search & review skills - systematic paper finding, screening, extraction, and citation traversal
Smart backward and forward citation following via Semantic Scholar, with relevance filtering and deduplication
Two-stage paper screening - abstract scoring then deep dive for specific data extraction
Expert guidance for setting up and organising research grant applications following established patterns for UKRI, EU, and other funding bodies
