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Research

Scientific computing and academic tools.

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verify-translation

Capture all manual pages and verify translations match page images using AI-powered checking. Identifies extraction failures and can regenerate extracted text from images.

Takazudo
Takazudo
research
open
computational-chemistry
0

tech-doc-reviewer

Expert technical document reviewer. PROACTIVELY review ADRs, Design Docs, and RFCs for quality, completeness, and principle alignment after creating or updating technical documents.

krhrtky
krhrtky
research
open
academic
0

paper-reading

Paper reading and analysis framework using Moonshot AI (Kimi). Actions: download, analyze, read, summarize, implement papers from arXiv, SIGGRAPH, etc. Features: intelligent paper fetching, AI deep analysis, personalized reading guidance, knowledge internalization, code generation. Supports: PDF parsing, multi-dimensional analysis (summary, innovation, methodology, implementation), structured notes, knowledge graphs, code framework generation.

flashpoint493
flashpoint493
research
open
academic
0

checking-theme-alignment

Validates that book chapters align with the core theme. Use when user says 'check theme alignment', 'does this fit the theme', 'verify alignment', or automatically after every 2 chapters are drafted.

djacobsmeyer
djacobsmeyer
research
open
academic
0

neurosurgical-book-parser

Extract structured knowledge from neurosurgical and spine surgery textbooks. Identifies anatomical structures, surgical procedures, complications, and clinical relationships. Use when processing medical PDFs, building surgical knowledge graphs, or creating clinical decision support content. Applies kaizen continuous improvement from prior extractions.

brainbloodbarrier
brainbloodbarrier
research
open
academic
0

turath-research-skill

This skill provides specialized tools for searching and retrieving Islamic classical texts from the Turath.io API and local metadata database. Use this skill when researching Islamic literature, finding book references, extracting page content, or creating content based on classical Islamic texts.

herbras
herbras
research
open
academic
0

search-code

Search code and documentation using full-text and semantic search. Accepts a query string and returns matching files with relevance scores.

hyper-light
hyper-light
research
open
academic
0

section-detection

Detect clinical note sections (HPI, ROS, Assessment, Plan) using regex patterns and LLM topic segmentation. Generates ToC with accurate byte offsets.

RooseveltAdvisors
RooseveltAdvisors
research
open
academic
0

vlex

Interacts with vLex legal APIs for document search, anonymization, citation extraction, and classification. Use when needing international legal documents, PII removal, or legal text analysis. Requires VLEX_API_KEY environment variable.

tcapelle
tcapelle
research
open
academic
0

deep-reading-framework

Three-pass critical reading framework for systematic document analysis. Supports tech blogs, retrospectives, technical documentation, personal writing, and academic papers. Primary focus on Third Pass critical analysis, context validation, and actionable reconstruction. Use when analyzing complex documents, performing critical reading, extracting actionable insights, or conducting deep analysis. Triggers include Third Pass, 비판적 분석, critique, 깊이 읽기, 심층 분석.

devkade
devkade
research
open
academic
0

pdf-reader

Read and extract content from PDF files using multiple methods. LOAD THIS SKILL WHEN: User says "讀取 PDF", "read PDF", "打開論文", "看這篇" | has PDF file path | needs to extract text from PDF. CAPABILITIES: PDF to markdown conversion, text extraction, figure detection, citation extraction.

u9401066
u9401066
research
open
academic
0

rlm-reasoning

Apply RLM (Recursive Language Model) reasoning pattern for large context processing. Use when analyzing large files, codebases, or documents. Triggers on "RLM pattern", "large file analysis", "selective reading", "PROBE EXTRACT CONFIRM", or when dealing with files over 1000 lines.

freedom07
freedom07
research
open
academic
0

qra

Extract Question-Reasoning-Answer pairs from text. Use --context for domain-focused extraction. Validates answers are grounded in source text.

grahama1970
grahama1970
research
open
academic
0

analyze-documents

Analyzes all documents in a folder and creates a comprehensive summary. Use when asked to summarize documents, understand a collection of files, get an overview of materials, or analyze what's in a folder.

Feedforward-AI
Feedforward-AI
research
open
scientific-computing
0

chart-generator

Creates text-based visualizations and reports showing the relationship between spelling errors and semantic distance. Use when you need to visualize experimental results.

aviferdman
aviferdman
research
open
scientific-computing
0

proteomics

Proteomics analysis toolkit for label-free quantitative proteomics. Invokes R scripts for normalization, visualization (volcano, heatmap, PCA, LOPIT), pathway analysis (KEGG, ConsensusPathDB), and protein list cross-referencing (MISEV2018, SASP, Matrisome). USE WHEN user says 'analyze proteomics', 'volcano plot', 'normalize protein data', 'pathway enrichment', 'check EV markers', 'SASP analysis', 'matrisome', OR mentions q-value, fold-change, or protein quantification.

JoBBurt
JoBBurt
research
open
scientific-computing
0

polars-bio

A high-performance skill for processing genomic data (VCF, FASTA, BED) using polars-bio. Features streaming VCF processing, interval joins, FASTA analysis, and variant annotation.

tgambin
tgambin
research
open
scientific-computing
0

scvitools

Comprehensive skill for scvi-tools - Deep probabilistic models for single-cell omics analysis. Use for scVI, scANVI, totalVI, MultiVI models, single-cell RNA-seq integration, batch correction, differential expression, and multimodal data analysis.

Ketomihine
Ketomihine
research
open
academic
0

grade-assessment

Apply the GRADE framework to assess certainty of evidence in systematic reviews. Use when users need to rate evidence quality, create Summary of Findings tables, or understand the factors that affect confidence in effect estimates.

matheus-rech
matheus-rech
research
open
scientific-computing
0

jupyter-notebook-analysis

Patterns for analyzing, improving, and documenting Jupyter notebooks for scientific data analysis. Includes data filtering, visualization optimization, and resource analysis techniques.

Delphine-L
Delphine-L
research
open
scientific-computing
0

scverse

Single-cell analysis patterns with AnnData and Scanpy. Use when working with single-cell RNA-seq data, creating or manipulating AnnData objects, performing quality control, normalization, dimensionality reduction, clustering, or visualization of single-cell datasets.

CodingKaiser
CodingKaiser
research
open
bioinformatics
0

meta-analysis

Use when performing meta-analysis, pooling study data, generating forest plots, funnel plots, assessing heterogeneity, or conducting subgroup and sensitivity analyses. Invoke for any statistical synthesis of multiple studies.

matheus-rech
matheus-rech
research
open
scientific-computing
0

zscore

Calculate z-scores for speleothem geochemical data. Use when analyzing cave isotope anomalies, finding significant deviations, or identifying potential earthquake signals. Triggers on "zscore", "calculate z", "anomaly analysis", "find anomalies".

DrSatsuma1
DrSatsuma1
research
open
scientific-computing
0

data-explore

Explore Hive tables and datasets in the Wellcome Collection data warehouse. Use this skill to query tables, understand schemas, or analyze data distributions. Invoke with /data-explore.

wellcomecollection
wellcomecollection
research
open
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