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Research

Scientific computing and academic tools.

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lab-tools
687

labstep

Query and display Labstep electronic lab notebook data — experiments, protocols, resources, and inventory — via labstepPy. Supports offline demo mode with synthetic biology data.

ClawBio
ClawBio
research
open
lab-tools
687

galaxy-bridge

Galaxy tool discovery, intelligent recommendation, and execution — 8,000+ bioinformatics tools from usegalaxy.org with multi-signal scoring and workflow suggestions

ClawBio
ClawBio
research
open
scientific-computing
687

cell-detection

Cell segmentation in fluorescence microscopy images. Supports Cellpose/cpsam (Cellpose 4.0) with additional backends planned. Produces segmentation masks, per-cell morphology metrics (area, diameter, centroid, eccentricity), overlay figures, and a report.md.

ClawBio
ClawBio
research
open
academic
665

web-search

Search the web using MiniMax web_search tool for real-time information, news, and facts.

CodePhiliaX
CodePhiliaX
research
open
astronomy-physics
664

alfworld-environment-scanner

Performs an initial scan of the ALFWorld environment to identify all visible objects and receptacles. Use when you first enter an environment and need to build a mental map for task planning. Processes raw observation text into a structured list of entities, categorizing them as objects or receptacles.

zjunlp
zjunlp
research
open
astronomy-physics
664

scienceworld-task-parser

Analyzes user instructions in ScienceWorld environments to extract specific task requirements and constraints. Use when receiving a new task to identify required objects, target locations, and action sequences before taking any environment actions.

zjunlp
zjunlp
research
open
lab-tools
664

scienceworld-inventory-focus

Use when the agent needs to confirm and prepare a specific inventory item before using it in an experiment or task step. This "focus on [ITEM] in inventory" action verifies the correct item has been collected and signals intent, ensuring operational readiness for subsequent actions like measurement, combination, or placement.

zjunlp
zjunlp
research
open
lab-tools
664

task-completion-focus

Focuses on a specific target object to signal task completion. Use when you have produced the required final object (like a grown banana) and need to formally complete the assigned task. This handles the 'focus on OBJ' action that typically marks successful task execution in the environment.

zjunlp
zjunlp
research
open
lab-tools
664

scienceworld-measurement-taker

Use when the agent needs to measure a quantitative property (temperature, weight, pH) of a target object or substance using a measurement tool. This skill covers acquiring the tool, preparing both tool and target with focus actions, executing the measurement via "use [TOOL] on [TARGET]", and interpreting the resulting value for conditional decisions such as classification or placement.

zjunlp
zjunlp
research
open
lab-tools
664

scienceworld-threshold-evaluator

Use when the agent has just obtained a numerical measurement (temperature, weight, pH) and must compare it against a predefined threshold to determine a binary outcome. This skill extracts the measured value, evaluates it against the threshold condition (above/below), and executes the corresponding branch action such as classification or placement.

zjunlp
zjunlp
research
open
lab-tools
664

alfworld-storage-explorer

Systematically explores storage receptacles (drawers, cabinets, shelves) to find an appropriate placement location for an object. Use when the agent needs to store an item but the exact target receptacle is unknown or ambiguous. Opens, inspects, and closes candidate receptacles to assess suitability, then places the object in the best match.

zjunlp
zjunlp
research
open
lab-tools
664

scienceworld-conditional-placer

Places an object into one of several designated containers based on a measured condition, such as a temperature threshold. Use this skill when you have completed a measurement or assessment and the task requires sorting or storing the object into one of multiple containers according to a rule (e.g., "if temperature > X, place in container A; otherwise container B").

zjunlp
zjunlp
research
open
lab-tools
664

scienceworld-item-fetcher

Picks up a specified object from the environment and moves it into the agent's inventory. Use this skill when you identify a required tool or material (e.g., thermometer, metal pot) that needs to be collected for later use in an experiment or task. Takes an object name as input and confirms the item's transfer to inventory.

zjunlp
zjunlp
research
open
lab-tools
664

alfworld-inventory-management

Use when the agent must collect and track multiple instances of the same object type in ALFWorld (e.g., "put two cellphone in bed"). This skill maintains a count of collected versus needed objects, guides systematic searching through receptacles, and ensures each found object is placed at the target before searching for the next.

zjunlp
zjunlp
research
open
lab-tools
664

scienceworld-process-monitor

This skill observes the state of an active apparatus and its contents to track progress. Use when you need to periodically check for state changes (e.g., solid to liquid) during a heating or reaction process. The skill uses 'look at' or 'examine' actions on the apparatus and substance.

zjunlp
zjunlp
research
open
lab-tools
664

scienceworld-living-entity-identifier

Analyzes room observations to identify potential living things (e.g., eggs, plants, animals) among listed objects. Use this skill when a task involves finding, focusing on, or interacting with a living thing, biological entity, or organism. Processes observation text, flags candidate living items based on domain knowledge, and outputs a focused target for subsequent actions like focus on or pick up.

zjunlp
zjunlp
research
open
lab-tools
664

alfworld-object-state-inspector

Inspects a receptacle's contents by navigating to it and reading the observation. Use when you need to check what is on or inside a receptacle (e.g., "what's on the shelf", "is the holder empty", "check the table for items"). Executes `go to {receptacle}`, parses the observation listing items present, and decides whether to take an item, search elsewhere, or proceed.

zjunlp
zjunlp
research
open
lab-tools
664

scienceworld-growth-focuser

Use when you have planted a seed or need to track a plant's growth stage (sprouting, flowering, reproduction). Applies the 'focus on' action to a specific plant or biological entity to signal intent and monitor its development. Trigger after planting or when you need to observe life cycle progression in the ScienceWorld environment.

zjunlp
zjunlp
research
open
lab-tools
664

scienceworld-task-focuser

Use when the agent needs to direct attention to a specific object in the environment or inventory before performing a critical action such as measuring, using, or connecting. This preparatory "focus on" step signals intent to the ScienceWorld system, often unlocking required state changes for subsequent interactive steps in experimental procedures.

zjunlp
zjunlp
research
open
lab-tools
664

scienceworld-animal-identifier

Use when the agent needs to locate, identify, and focus on a specific animal or biological entity in the ScienceWorld environment. This skill handles tasks involving animal comparison, examination, or interaction (such as determining lifespan extremes) by navigating to the correct location with "teleport to", surveying with "look around", and executing "focus on ANIMAL" with the exact entity name.

zjunlp
zjunlp
research
open
bioinformatics
654

prismer-evolve-record

Record the outcome of applying an evolution strategy. Use after resolving an error where prismer-evolve-analyze provided a recommendation, to feed back success or failure to the network.

Prismer-AI
Prismer-AI
research
open
lab-tools
654

evolve-record

Record the outcome after applying an evolution strategy.

Prismer-AI
Prismer-AI
research
open
scientific-computing
654

community-browse

Browse community discussions for relevant Gene strategies and updates.

Prismer-AI
Prismer-AI
research
open
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