scientific-computing
538
motion-capture-analyzer
Motion capture data processing and analysis skill for gait analysis and biomechanical studies
a5c-ai
research
sorting
stars
current ordering strategy
query
all entries
refine the visible subset
scientific-computing
538
supply-chain-simulation-engine
Supply chain discrete-event simulation for scenario testing and optimization
a5c-ai
research
scientific-computing
538
hysys-dynamic-simulator
Aspen HYSYS integration skill for dynamic simulation, pressure-flow networks, and process dynamics
a5c-ai
research
scientific-computing
538
scale-up-process-analyzer
Process engineering skill for analyzing and optimizing nanomaterial synthesis scale-up from lab to production
a5c-ai
research
scientific-computing
538
gromacs-md-executor
GROMACS molecular dynamics skill for nanoparticle-biomolecule interaction simulations
a5c-ai
research
scientific-computing
538
experiment-planner-doe
Design of Experiments skill for systematic optimization of nanomaterial synthesis and processing
a5c-ai
research
scientific-computing
538
ode-solver-library
Numerical methods for ordinary differential equations
a5c-ai
research
scientific-computing
538
pde-solver-library
Numerical methods for partial differential equations
a5c-ai
research
scientific-computing
538
maxima-cas-interface
Open-source computer algebra system for symbolic computation
a5c-ai
research
scientific-computing
538
nanoparticle-synthesis-optimizer
Synthesis parameter optimization skill for metal, semiconductor, and oxide nanoparticle production with automated protocol generation and reproducibility validation
a5c-ai
research
scientific-computing
538
thermal-analysis
Skill for thermal characterization workflows including DSC, TGA, DTA, TMA, and DMA for phase transitions, decomposition, and viscoelastic property analysis
a5c-ai
research
scientific-computing
538
supply-chain-digital-twin
Digital twin representation of supply chain for real-time monitoring and simulation
a5c-ai
research
scientific-computing
538
discrete-event-simulator
Discrete event simulation skill for modeling and analyzing complex systems with stochastic processes.
a5c-ai
research
scientific-computing
530
ljg-xray-paper
Paper X-ray. Extracts what the paper says (problem-perspective-result) and what it means for lijigang (cognitive delta cards in ASCII art). Use when user shares an arxiv link, paper URL, PDF, or asks to analyze a research paper. Usually called via ljg-xray router. Do NOT use for blog posts or non-academic articles (use ljg-xray-article instead).
lijigang
research
scientific-computing
493
research-lookup
Look up current research information using Perplexity's Sonar Pro or Sonar Reasoning Pro models through OpenRouter. Automatically selects the best model based on query complexity. Search academic papers, recent studies, technical documentation, and general research information with citations.
jimmc414
research
scientific-computing
493
clinical-decision-support
Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.
jimmc414
research
scientific-computing
493
hypothesis-generation
Generate testable hypotheses. Formulate from observations, design experiments, explore competing explanations, develop predictions, propose mechanisms, for scientific inquiry across domains.
jimmc414
research
scientific-computing
471
bio-sashimi-plots
Creates sashimi plots showing RNA-seq read coverage and splice junction counts using ggsashimi or rmats2sashimiplot. Visualizes differential splicing events with grouped samples and junction read support. Use when visualizing specific splicing events or validating differential splicing results.
GPTomics
research
scientific-computing
471
bio-metabolomics-pathway-mapping
Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst. Perform pathway enrichment and topology analysis. Use when interpreting metabolomics results in the context of biochemical pathways.
GPTomics
research
scientific-computing
471
bio-experimental-design-power-analysis
Calculates statistical power and minimum sample sizes for RNA-seq, ATAC-seq, and other sequencing experiments. Use when planning experiments, determining how many replicates are needed, or assessing whether a study is adequately powered to detect expected effect sizes.
GPTomics
research
scientific-computing
471
bio-data-visualization-circos-plots
Create circular genome visualizations with Circos and pyCircos. Display multi-track data including ideograms, genes, variants, CNVs, and interaction arcs. Use when creating circular genome visualizations.
GPTomics
research
scientific-computing
471
bio-experimental-design-sample-size
Estimates required sample sizes for differential expression, ChIP-seq, methylation, and proteomics studies. Use when budgeting experiments, writing grant proposals, or determining minimum replicates needed to achieve statistical significance for expected effect sizes.
GPTomics
research
scientific-computing
471
bio-machine-learning-prediction-explanation
Explains machine learning predictions on omics data using SHAP values and LIME for feature attribution. Identifies which genes or features drive classifier decisions. Use when interpreting biomarker classifiers or understanding model predictions.
GPTomics
research
scientific-computing
471
bio-copy-number-cnv-visualization
Visualize copy number profiles, segments, and compare across samples. Create publication-quality plots of CNV data from CNVkit, GATK, or other callers. Use when creating genome-wide CNV plots, sample heatmaps, or chromosome-level visualizations.
GPTomics
research