home/categories/bioinformatics/gptomics-bioskills-workflows-spatial-pipeline-skill-md
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bio-workflows-spatial-pipeline

End-to-end spatial transcriptomics workflow for Visium/Xenium data. Covers data loading, preprocessing, spatial analysis, domain detection, and visualization with Squidpy. Use when analyzing spatial transcriptomics data.

GPTomics
maintainer
GPTomics
آخر تحديث 2/13/2026
النجوم
471
التفرعات
81
quick start

Installation and usage

End-to-end spatial transcriptomics workflow for Visium/Xenium data. Covers data loading, preprocessing, spatial analysis, domain detection, and visualization with Squidpy. Use when analyzing spatial transcriptomics data.

التثبيت
$ install --globalskills.sh
الاستخدام

بعد التثبيت، يمكنك استخدام هذه المهارة بتشغيل الأمر التالي في الطرفية:

skills use bio-workflows-spatial-pipeline