home/categories/lab-tools/mdbabumiamssm-llms-universal-life-science-and-clinical-skills-skills-ngs-qc-read-qc-contamination-screening-skill-md
lab-toolsresearch
bio-read-qc-contamination-screening
Detect sample contamination and cross-species reads using FastQ Screen. Screen reads against multiple reference genomes to identify bacterial, viral, adapter, or sample swap contamination. Use when suspecting cross-contamination or working with samples prone to microbial contamination.
maintainer
mdbabumiamssm
آخر تحديث 2/4/2026
النجوم
24
التفرعات
4
quick start
Installation and usage
Detect sample contamination and cross-species reads using FastQ Screen. Screen reads against multiple reference genomes to identify bacterial, viral, adapter, or sample swap contamination. Use when suspecting cross-contamination or working with samples prone to microbial contamination.
التثبيت
$ install --globalskills.sh
الاستخدام
بعد التثبيت، يمكنك استخدام هذه المهارة بتشغيل الأمر التالي في الطرفية:
skills use bio-read-qc-contamination-screening