single-cell-foundation-model-scgpt

Use this skill when a task involves the local scGPT project in /DATA/disk0/zhaosy/home/scGPT, especially scGPT preprocessing and binning, checkpoint vocabulary matching, cell embedding extraction, reference mapping, fine-tuning scGPT for integration or annotation, or using scGPT tutorials for GRN, perturbation, multiomics, and reference mapping workflows.