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Scientific computing and academic tools.

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computational-chemistry

1K

target-based-lead-design

Generate diverse lead compounds for a specific protein target using structure-based drug design with MolCraft. Use this skill when: (1) Designing drug candidates for a known protein target (PDB ID or disease name), (2) Generating structurally diverse molecules with optimized binding affinity, (3) Filtering candidates based on user-defined criteria (docking, ADMET, drug-likeness), (4) Iteratively refining leads through regeneration when criteria are not met.

PharMolix

research

scientific-computing

1K

molecule-biochemical-significance-query-biot5

Query a molecule's biochemical significance and roles in biology and chemistry using BioT5 multi-modal model. Use this skill when: (1) Understanding a molecule's biological roles and functions, (2) Describing a molecule's chemical significance and applications, (3) Getting natural language explanations of molecular properties, (4) Summarizing what a molecule is used for or its metabolic relevance.

PharMolix

research

scientific-computing

1K

iupac-name-identification-biot5

Identify the IUPAC name of a molecule using BioT5 question answering model. Use this skill when: (1) User wants to find the IUPAC name of a molecule, (2) User asks "What is the IUPAC name?" or "What's the systematic name?", (3) User provides a SMILES string and wants the IUPAC nomenclature.

PharMolix

research

scientific-computing

1K

protein-mutation-analysis

Analyze protein mutations by retrieving protein data, explaining mutation effects, predicting protein structure, and visualizing results. Use this skill when the user asks about protein mutations, wants to understand mutation effects, or needs to analyze genetic variants. Triggers on phrases like "analyze mutation", "explain mutation", "what does this mutation do", "protein variant analysis".

PharMolix

research

scientific-computing

1K

uniprot-query

Query UniProt database for protein sequences, metadata, and search by criteria. Use this skill when: (1) Looking up protein information by UniProt accession ID, (2) Searching proteins by gene name, organism, function, or disease, (3) Retrieving comprehensive protein metadata including domains, PTMs, and annotations.

PharMolix

research

scientific-computing

1K

protein-function-prediction

Predict protein function and properties from amino acid sequence using BioT5. Use this skill when: (1) You have a protein sequence and want to understand its biological function, (2) You need to identify enzyme activity, pathway involvement, or molecular interactions, (3) You want a concise description of protein properties from sequence alone.

PharMolix

research

scientific-computing

1K

similar-protein-retrieval

Retrieve proteins with similar structures, sequences, or from the same family. Use this skill when: (1) Finding similar proteins or homologs, (2) Searching for proteins with similar 3D structure, (3) Performing sequence similarity search, (4) Discovering proteins in the same family.

PharMolix

research

scientific-computing

1K

single-cell-foundation-model-geneformer

Use this skill when a task involves Geneformer workflows, especially TranscriptomeTokenizer input preparation, tokenized `.dataset` generation, cell or gene classification with `Classifier`, embedding extraction with `EmbExtractor`, and in silico perturbation analysis with `InSilicoPerturber`.

PharMolix

research

computational-chemistry

1K

excel-lbo-modeler

Create leveraged buyout (LBO) models in Excel with sources & uses, debt schedules, cash flow waterfalls, and IRR calculations for private equity analysis Activates when you request "excel lbo modeler" functionality.

jeremylongshore

research

scientific-computing

1K

forecasting-time-series-data

This skill enables Claude to forecast future values based on historical time series data. It analyzes time-dependent data to identify trends, seasonality, and other patterns. Use this skill when the user asks to predict future values of a time series, analyze trends in data over time, or requires insights into time-dependent data. Trigger terms include "forecast," "predict," "time series analysis," "future values," and requests involving temporal data.

jeremylongshore

research

scientific-computing

1K

performing-regression-analysis

This skill empowers Claude to perform regression analysis and modeling using the regression-analysis-tool plugin. It analyzes datasets, generates appropriate regression models (linear, polynomial, etc.), validates the models, and provides performance metrics. Use this skill when the user explicitly requests regression analysis, prediction based on data, or mentions terms like "linear regression," "polynomial regression," "regression model," or "predictive modeling." This skill is also helpful when the user needs to understand the relationship between variables in a dataset.

jeremylongshore

research

scientific-computing

1K

forecasting-time-series-data

This skill enables Claude to forecast future values based on historical time series data. It analyzes time-dependent data to identify trends, seasonality, and other patterns. Use this skill when the user asks to predict future values of a time series, analyze trends in data over time, or requires insights into time-dependent data. Trigger terms include "forecast," "predict," "time series analysis," "future values," and requests involving temporal data.

jeremylongshore

research

scientific-computing

1K

forecasting-time-series-data

Process this skill enables AI assistant to forecast future values based on historical time series data. it analyzes time-dependent data to identify trends, seasonality, and other patterns. use this skill when the user asks to predict future values of a time ser... Use when appropriate context detected. Trigger with relevant phrases based on skill purpose.

jeremylongshore

research

scientific-computing

1K

cohort-analysis-creator

Cohort Analysis Creator - Auto-activating skill for Data Analytics. Triggers on: cohort analysis creator, cohort analysis creator Part of the Data Analytics skill category.

jeremylongshore

research

scientific-computing

1K

detecting-data-anomalies

This skill empowers Claude to identify anomalies and outliers within datasets. It leverages the anomaly-detection-system plugin to analyze data, apply appropriate machine learning algorithms, and highlight unusual data points. Use this skill when the user requests anomaly detection, outlier analysis, or identification of unusual patterns in data. Trigger this skill when the user mentions "anomaly detection," "outlier analysis," "unusual data," or requests insights into data irregularities.

jeremylongshore

research

academic

1K

analyzing-text-sentiment

Execute this skill enables AI assistant to analyze the sentiment of text data. it identifies the emotional tone expressed in text, classifying it as positive, negative, or neutral. use this skill when a user requests sentiment analysis, opinion mining, or emoti... Use when analyzing code or data. Trigger with phrases like 'analyze', 'review', or 'examine'.

jeremylongshore

research

scientific-computing

1K

performing-regression-analysis

This skill empowers Claude to perform regression analysis and modeling using the regression-analysis-tool plugin. It analyzes datasets, generates appropriate regression models (linear, polynomial, etc.), validates the models, and provides performance metrics. Use this skill when the user explicitly requests regression analysis, prediction based on data, or mentions terms like "linear regression," "polynomial regression," "regression model," or "predictive modeling." This skill is also helpful when the user needs to understand the relationship between variables in a dataset.

jeremylongshore

research

scientific-computing

1K

detecting-data-anomalies

This skill empowers Claude to identify anomalies and outliers within datasets. It leverages the anomaly-detection-system plugin to analyze data, apply appropriate machine learning algorithms, and highlight unusual data points. Use this skill when the user requests anomaly detection, outlier analysis, or identification of unusual patterns in data. Trigger this skill when the user mentions "anomaly detection," "outlier analysis," "unusual data," or requests insights into data irregularities.

jeremylongshore

research

computational-chemistry

1K

roc-curve-plotter

Roc Curve Plotter - Auto-activating skill for ML Training. Triggers on: roc curve plotter, roc curve plotter Part of the ML Training skill category.

jeremylongshore

research

scientific-computing

1K

detecting-data-anomalies

This skill empowers Claude to identify anomalies and outliers within datasets. It leverages the anomaly-detection-system plugin to analyze data, apply appropriate machine learning algorithms, and highlight unusual data points. Use this skill when the user requests anomaly detection, outlier analysis, or identification of unusual patterns in data. Trigger this skill when the user mentions "anomaly detection," "outlier analysis," "unusual data," or requests insights into data irregularities.

jeremylongshore

research

scientific-computing

1K

performing-regression-analysis

This skill empowers Claude to perform regression analysis and modeling using the regression-analysis-tool plugin. It analyzes datasets, generates appropriate regression models (linear, polynomial, etc.), validates the models, and provides performance metrics. Use this skill when the user explicitly requests regression analysis, prediction based on data, or mentions terms like "linear regression," "polynomial regression," "regression model," or "predictive modeling." This skill is also helpful when the user needs to understand the relationship between variables in a dataset.

jeremylongshore

research

scientific-computing

1K

forecasting-time-series-data

This skill enables Claude to forecast future values based on historical time series data. It analyzes time-dependent data to identify trends, seasonality, and other patterns. Use this skill when the user asks to predict future values of a time series, analyze trends in data over time, or requires insights into time-dependent data. Trigger terms include "forecast," "predict," "time series analysis," "future values," and requests involving temporal data.

jeremylongshore

research

academic

1K

perplexity-cost-tuning

Optimize Perplexity costs through tier selection, sampling, and usage monitoring. Use when analyzing Perplexity billing, reducing API costs, or implementing usage monitoring and budget alerts. Trigger with phrases like "perplexity cost", "perplexity billing", "reduce perplexity costs", "perplexity pricing", "perplexity expensive", "perplexity budget".

jeremylongshore

research

academic

1K

analyzing-text-with-nlp

This skill enables Claude to perform natural language processing and text analysis using the nlp-text-analyzer plugin. It should be used when the user requests analysis of text, including sentiment analysis, keyword extraction, topic modeling, or other NLP tasks. The skill is triggered by requests involving "analyze text", "sentiment analysis", "keyword extraction", "topic modeling", or similar phrases related to text processing. It leverages AI/ML techniques to understand and extract insights from textual data.

jeremylongshore

research

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