home/categories/bioinformatics/aipoch-medical-research-skills-scientific-skills-data-analysis-pydeseq2-skill-md
bioinformaticsresearch
pydeseq2
Differential gene expression analysis for bulk RNA-seq count matrices using a DESeq2-like workflow in Python; use when you need Wald tests, FDR correction, and optional LFC shrinkage for condition/batch/covariate designs.
maintainer
aipoch
Updated 3/23/2026
Stars
124
Forks
16
quick start
Installation and usage
Differential gene expression analysis for bulk RNA-seq count matrices using a DESeq2-like workflow in Python; use when you need Wald tests, FDR correction, and optional LFC shrinkage for condition/batch/covariate designs.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use pydeseq2