scanpy-singlecell
Single-cell RNA-seq analysis with scanpy and anndata. Use when: (1) scRNA-seq preprocessing and QC, (2) clustering and cell type annotation, (3) differential expression analysis, (4) trajectory and pseudotime analysis, (5) UMAP/tSNE visualization. NOT for: bulk RNA-seq differential expression (use DESeq2/edgeR), protein structure analysis (use pdb-structure), or imaging data.
Installation and usage
Single-cell RNA-seq analysis with scanpy and anndata. Use when: (1) scRNA-seq preprocessing and QC, (2) clustering and cell type annotation, (3) differential expression analysis, (4) trajectory and pseudotime analysis, (5) UMAP/tSNE visualization. NOT for: bulk RNA-seq differential expression (use DESeq2/edgeR), protein structure analysis (use pdb-structure), or imaging data.
Once installed, you can use this skill by running the following command in your terminal:
skills use scanpy-singlecell