bio-alignment-indexing

Name: bio-alignment-indexing
Author: GPTomics

Create and use BAI/CSI indices for BAM/CRAM files using samtools and pysam. Use when enabling random access to alignment files or fetching specific genomic regions.

View Source bioinformatics

maintainer

GPTomics

Updated 2/13/2026

Stars

471

Forks

quick start

Installation and usage

Create and use BAI/CSI indices for BAM/CRAM files using samtools and pysam. Use when enabling random access to alignment files or fetching specific genomic regions.

Installation

$ install --globalskills.sh

Usage

Once installed, you can use this skill by running the following command in your terminal:

skills use bio-alignment-indexing