home/categories/bioinformatics/gptomics-bioskills-data-visualization-upset-plots-skill-md
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bio-data-visualization-upset-plots

Create UpSet plots to visualize set intersections as an alternative to Venn diagrams using UpSetR or upsetplot. Use when comparing overlapping gene sets, peak sets, or sample groups with more than 3 sets.

GPTomics
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GPTomics
Updated 2/13/2026
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quick start

Installation and usage

Create UpSet plots to visualize set intersections as an alternative to Venn diagrams using UpSetR or upsetplot. Use when comparing overlapping gene sets, peak sets, or sample groups with more than 3 sets.

Installation
$ install --globalskills.sh
Usage

Once installed, you can use this skill by running the following command in your terminal:

skills use bio-data-visualization-upset-plots