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bio-rna-quantification-featurecounts-counting

Count reads per gene from aligned BAM files using Subread featureCounts. Use when processing BAM files from STAR/HISAT2 to generate gene-level counts for DESeq2/edgeR.

View Sourcebioinformatics
GPTomics
maintainer
GPTomics
Updated 2/13/2026
Stars
471
Forks
81
quick start

Installation and usage

Count reads per gene from aligned BAM files using Subread featureCounts. Use when processing BAM files from STAR/HISAT2 to generate gene-level counts for DESeq2/edgeR.

Installation
$ install --globalskills.sh
Usage

Once installed, you can use this skill by running the following command in your terminal:

skills use bio-rna-quantification-featurecounts-counting