skills.homes logoskills.homescapability registry
home/categories/scientific-computing/jackspace-claudeskillz-skills-scientific-pkg-biopython-skill-md
cd ..
scientific-computingresearch

biopython

Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.

View Sourcescientific-computing
jackspace
maintainer
jackspace
Updated 11/20/2025
Stars
14
Forks
5
quick start

Installation and usage

Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.

Installation
$ install --globalskills.sh
Usage

Once installed, you can use this skill by running the following command in your terminal:

skills use biopython