home/categories/scientific-computing/lifangda-claude-plugins-cli-tool-skills-library-scientific-computing-bioinformatics-pysam-skill-md
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pysam
Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.
maintainer
lifangda
Updated 10/29/2025
Stars
32
Forks
9
quick start
Installation and usage
Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use pysam