home/categories/astronomy-physics/mdbabumiamssm-llms-universal-life-science-and-clinical-skills-skills-genomics-spatial-transcriptomics-bioskills-image-analysis-skill-md
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bio-spatial-transcriptomics-image-analysis
Process and analyze tissue images from spatial transcriptomics data using Squidpy. Extract image features, segment cells/nuclei, and compute morphological features from H&E or IF images. Use when processing tissue images for spatial transcriptomics.
maintainer
mdbabumiamssm
Updated 2/4/2026
Stars
24
Forks
4
quick start
Installation and usage
Process and analyze tissue images from spatial transcriptomics data using Squidpy. Extract image features, segment cells/nuclei, and compute morphological features from H&E or IF images. Use when processing tissue images for spatial transcriptomics.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use bio-spatial-transcriptomics-image-analysis