home/categories/astronomy-physics/mdbabumiamssm-llms-universal-life-science-and-clinical-skills-skills-genomics-spatial-transcriptomics-bioskills-spatial-visualization-skill-md
astronomy-physicsresearch
bio-spatial-transcriptomics-spatial-visualization
Visualize spatial transcriptomics data using Squidpy and Scanpy. Create tissue plots with gene expression, clusters, and annotations overlaid on histology images. Use when visualizing spatial expression patterns.
maintainer
mdbabumiamssm
Updated 2/4/2026
Stars
24
Forks
4
quick start
Installation and usage
Visualize spatial transcriptomics data using Squidpy and Scanpy. Create tissue plots with gene expression, clusters, and annotations overlaid on histology images. Use when visualizing spatial expression patterns.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use bio-spatial-transcriptomics-spatial-visualization