home/categories/lab-tools/mdbabumiamssm-llms-universal-life-science-and-clinical-skills-skills-population-genetics-epidemiological-genomics-variant-surveillance-skill-md
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bio-epidemiological-genomics-variant-surveillance
Assign pathogen lineages and track variants using Nextclade and pangolin for viral surveillance. Monitor variant prevalence and identify emerging variants of concern. Use when classifying viral sequences, tracking lineage dynamics, or monitoring for variants of concern.
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mdbabumiamssm
Updated 2/4/2026
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quick start
Installation and usage
Assign pathogen lineages and track variants using Nextclade and pangolin for viral surveillance. Monitor variant prevalence and identify emerging variants of concern. Use when classifying viral sequences, tracking lineage dynamics, or monitoring for variants of concern.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use bio-epidemiological-genomics-variant-surveillance