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tcga-bulk-data-preprocessing-with-omicverse

TCGA bulk RNA-seq preprocessing with pyTCGA: GDC sample sheets, expression archives, clinical metadata, Kaplan-Meier survival analysis, and annotated AnnData export.

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Starlitnightly
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Starlitnightly
Updated 3/9/2026
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quick start

Installation and usage

TCGA bulk RNA-seq preprocessing with pyTCGA: GDC sample sheets, expression archives, clinical metadata, Kaplan-Meier survival analysis, and annotated AnnData export.

Installation
$ install --globalskills.sh
Usage

Once installed, you can use this skill by running the following command in your terminal:

skills use tcga-bulk-data-preprocessing-with-omicverse