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data-analysisdata-ai

genomics-alignment

Alignment statistics from SAM/BAM files: mapping rate, MAPQ distribution, insert size, duplicate rate, proper pair rate. Mirrors samtools-flagstat.

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TianGzlab
maintainer
TianGzlab
Updated 3/27/2026
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115
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quick start

Installation and usage

Alignment statistics from SAM/BAM files: mapping rate, MAPQ distribution, insert size, duplicate rate, proper pair rate. Mirrors samtools-flagstat.

Installation
$ install --globalskills.sh
Usage

Once installed, you can use this skill by running the following command in your terminal:

skills use genomics-alignment