home/categories/scientific-computing/tiangzlab-omicsclaw-skills-metabolomics-metabolomics-xcms-preprocessing-skill-md
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metabolomics-xcms-preprocessing
XCMS3 workflow for LC-MS/GC-MS metabolomics preprocessing. Peak detection (CentWave/MatchedFilter), RT alignment (Obiwarp), correspondence, gap filling, and CAMERA adduct/isotope annotation.
maintainer
TianGzlab
Updated 3/27/2026
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quick start
Installation and usage
XCMS3 workflow for LC-MS/GC-MS metabolomics preprocessing. Peak detection (CentWave/MatchedFilter), RT alignment (Obiwarp), correspondence, gap filling, and CAMERA adduct/isotope annotation.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use metabolomics-xcms-preprocessing