scientific-computingresearch
sc-filter
Filter cells and genes from single-cell RNA-seq AnnData objects using QC-derived thresholds or tissue presets. This wrapper removes low-quality cells/genes but does not normalize, cluster, or annotate the dataset.
maintainer
TianGzlab
Updated 4/4/2026
Stars
115
Forks
23
quick start
Installation and usage
Filter cells and genes from single-cell RNA-seq AnnData objects using QC-derived thresholds or tissue presets. This wrapper removes low-quality cells/genes but does not normalize, cluster, or annotate the dataset.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use sc-filter