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sc-pseudotime

Single-cell pseudotime and lineage inference after clustering, with DPT, Palantir, VIA, CellRank, or Slingshot plus post-hoc trajectory gene ranking.

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TianGzlab
maintainer
TianGzlab
Updated 4/10/2026
Stars
115
Forks
23
quick start

Installation and usage

Single-cell pseudotime and lineage inference after clustering, with DPT, Palantir, VIA, CellRank, or Slingshot plus post-hoc trajectory gene ranking.

Installation
$ install --globalskills.sh
Usage

Once installed, you can use this skill by running the following command in your terminal:

skills use sc-pseudotime