scientific-computingresearch
spatial-de
Differential expression and marker discovery for spatial transcriptomics using Scanpy Wilcoxon / t-test or sample-aware pseudobulk PyDESeq2.
maintainer
TianGzlab
Updated 3/30/2026
Stars
115
Forks
23
quick start
Installation and usage
Differential expression and marker discovery for spatial transcriptomics using Scanpy Wilcoxon / t-test or sample-aware pseudobulk PyDESeq2.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use spatial-de