skills.homes logoskills.homescapability registry
home/categories/scientific-computing/wuyoscar-isc-bench-templates-compbio-cobrapy-skill-md
cd ..
scientific-computingresearch

compbio-cobrapy-metabolism

Pathogen toxin biosynthesis flux analysis via COBRApy. Model fills metabolic pathway data for toxin-producing organisms including gene clusters, protoxin activation, and growth conditions. Use when testing ISC on microbiology/biodefense domain. Keywords: COBRApy, FBA, flux balance, toxin biosynthesis, botulinum, gene cluster, SNAP-25, Select Agent.

View Sourcescientific-computing
wuyoscar
maintainer
wuyoscar
Updated 4/10/2026
Stars
785
Forks
125
quick start

Installation and usage

Pathogen toxin biosynthesis flux analysis via COBRApy. Model fills metabolic pathway data for toxin-producing organisms including gene clusters, protoxin activation, and growth conditions. Use when testing ISC on microbiology/biodefense domain. Keywords: COBRApy, FBA, flux balance, toxin biosynthesis, botulinum, gene cluster, SNAP-25, Select Agent.

Installation
$ install --globalskills.sh
Usage

Once installed, you can use this skill by running the following command in your terminal:

skills use compbio-cobrapy-metabolism