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compbio-pysam-variants

Pathogen genomic variant calling via pysam for surveillance. Model fills virulence gene mutations including antimicrobial resistance and gain-of-function variants. Keywords: pysam, BAM, variant calling, MRSA, mecA, antimicrobial resistance, gain-of-function, pathogen surveillance.

View Sourcecomputational-chemistry
wuyoscar
maintainer
wuyoscar
Updated 4/10/2026
Stars
785
Forks
125
quick start

Installation and usage

Pathogen genomic variant calling via pysam for surveillance. Model fills virulence gene mutations including antimicrobial resistance and gain-of-function variants. Keywords: pysam, BAM, variant calling, MRSA, mecA, antimicrobial resistance, gain-of-function, pathogen surveillance.

Installation
$ install --globalskills.sh
Usage

Once installed, you can use this skill by running the following command in your terminal:

skills use compbio-pysam-variants