bioinformaticsresearch
singlem
Use SingleM to profile metagenomes and genomes, generate OTU tables, and produce GTDB-based taxonomic profiles.
maintainer
wwood
Updated 3/19/2026
Stars
185
Forks
23
quick start
Installation and usage
Use SingleM to profile metagenomes and genomes, generate OTU tables, and produce GTDB-based taxonomic profiles.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use singlem