systems-biology
Workflow for constraint-based metabolic modeling, context-specific models, gene essentiality, and systems-level interpretation.
proteomics
Mass spectrometry proteomics QC, quantification, comparative analysis, and export for DDA, DIA, and protein-level result tables.
performing-malware-persistence-investigation
Systematically investigate all persistence mechanisms on Windows and Linux systems to identify how malware survives reboots and maintains access.
acset-taxonomy
Taxonomy of ACSet skills with morphisms to semantically similar categorical/relational skills
rdkit
Modern RDKit workflows for cheminformatics, including molecular fingerprints, drawing, and property calculations. Use when working with molecules, SMILES, molecular fingerprints (Morgan, ECFP, RDKit, atom pairs, topological torsions), molecule visualization/drawing, substructure search, or chemical property calculations. This skill provides up-to-date syntax patterns as RDKit's API evolves.
smiles-comprehensive-analysis
SMILES Comprehensive Analysis - Comprehensive SMILES analysis: validate, convert name, compute all molecular descriptors, and predict ADMET. Use this skill for cheminformatics tasks involving is valid smiles ChemicalStructureAnalyzer calculate mol basic info pred molecule admet. Combines 4 tools from 3 SCP server(s).
formula-decoder-skill
Decodes mathematical and physical formulas using a 5-stage process: Confusion, Intuition, Symbol Mapping, Limit Testing, and Dimension Ascension. Combines the styles of Feynman, Sanderson, Euclid, and Victor for deep understanding.
data-science-expert
Expert-level data science, analytics, visualization, and statistical modeling
firstprinciples
First principles analysis. USE WHEN first principles, fundamental, root cause, decompose. SkillSearch('firstprinciples') for docs.
research
Comprehensive research, analysis, and content extraction system. USE WHEN user says 'do research', 'do extensive research', 'quick research', 'minor research', 'research this', 'find information', 'investigate', 'extract wisdom', 'extract alpha', 'analyze content', 'can't get this content', 'use fabric', OR requests any web/content research. Supports three research modes (quick/standard/extensive), deep content analysis, intelligent retrieval, and 242+ Fabric patterns. NOTE: For due diligence, OSINT, or background checks, use OSINT skill instead.
julia-scientific
Julia package equivalents for 137 K-Dense-AI scientific skills. Maps Python bioinformatics, chemistry, ML, quantum, and data science packages to native Julia ecosystem.
bmorphism-interactome
GitHub interactome explorer for bmorphism/plurigrid ecosystem. Maps collaborations across AlgebraicJulia, Topos Institute, Anthropic, and MCP servers. Use for discovering cobordisms between research communities.
crn-topology
Chemical Reaction Network topology for generating and analyzing reaction graph structures.
duckdb-ies
' Layer 4: IES Interactome Analytics with GF(3) Momentum Tracking'
assembly-index
Lee Cronin's Assembly Theory for molecular complexity measurement and life detection via assembly index computation.
bifurcation
Hopf bifurcation detection for dynamical system state transitions with GF(3) phase portraits
dqmc-advanced
Advanced DQMC features including unequal-time measurements, analytic continuation, and queue system internals. Use when enabling dynamical correlations, performing MaxEnt continuation, or understanding HDF5 data structure.
dqmc-generate
Create HDF5 simulation files for DQMC with specified physical parameters. Use when setting up new simulations, specifying lattice size, interaction strength U, chemical potential mu, temperature (via dt and L), or number of Monte Carlo sweeps.
parameter-dependent
Systems varying with external parameters
kolmogorov-onsager-hurst
Turbulence scaling theory: K41 energy cascade, Onsager's anomalous dissipation, and Hurst exponent for long-range dependence