spatial-transcriptomics-spatial-data-io
Load spatial transcriptomics data from Visium, Xenium, MERFISH, Slide-seq, and other platforms using Squidpy and SpatialData. Use this skill when: (1) Loading Visium spatial transcriptomics data from Space Ranger output, (2) Loading Xenium single-cell resolution spatial data, (3) Loading MERFISH, CosMx, or other spatial platforms, (4) Converting between SpatialData and AnnData formats.
Installation and usage
Load spatial transcriptomics data from Visium, Xenium, MERFISH, Slide-seq, and other platforms using Squidpy and SpatialData. Use this skill when: (1) Loading Visium spatial transcriptomics data from Space Ranger output, (2) Loading Xenium single-cell resolution spatial data, (3) Loading MERFISH, CosMx, or other spatial platforms, (4) Converting between SpatialData and AnnData formats.
Après l'installation, vous pouvez utiliser ce skill en exécutant la commande suivante dans votre terminal :
skills use spatial-transcriptomics-spatial-data-io