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tcga-bulk-data-preprocessing-with-omicverse

TCGA bulk RNA-seq preprocessing with pyTCGA: GDC sample sheets, expression archives, clinical metadata, Kaplan-Meier survival analysis, and annotated AnnData export.

Voir le code sourcescientific-computing
Starlitnightly
maintainer
Starlitnightly
Mis à jour 3/9/2026
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943
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116
quick start

Installation and usage

TCGA bulk RNA-seq preprocessing with pyTCGA: GDC sample sheets, expression archives, clinical metadata, Kaplan-Meier survival analysis, and annotated AnnData export.

Installation
$ install --globalskills.sh
Utilisation

Après l'installation, vous pouvez utiliser ce skill en exécutant la commande suivante dans votre terminal :

skills use tcga-bulk-data-preprocessing-with-omicverse