data-engineeringdata-ai
spatial-raw-processing
Process barcoded spatial transcriptomics FASTQ pairs with st_pipeline, preserve upstream artifacts, convert the counts matrix into a standardized raw_counts.h5ad, and hand off cleanly to spatial-preprocess.
maintainer
TianGzlab
Mis à jour 4/6/2026
Étoiles
115
Forks
23
quick start
Installation and usage
Process barcoded spatial transcriptomics FASTQ pairs with st_pipeline, preserve upstream artifacts, convert the counts matrix into a standardized raw_counts.h5ad, and hand off cleanly to spatial-preprocess.
Installation
$ install --globalskills.sh
Utilisation
Après l'installation, vous pouvez utiliser ce skill en exécutant la commande suivante dans votre terminal :
skills use spatial-raw-processing