bioinformatics
0
scvelo-complete
scVelo RNA速度分析工具包 - 100%覆盖文档（78个文件：完整API+教程+动态建模+可视化）
Ketomihine
research
sorting
stars
current ordering strategy
query
all entries
refine the visible subset
bioinformatics
0
scglue-complete
scGLUE 单细胞多组学数据整合工具包 - 100%覆盖文档（完整API+教程+数据整合+图谱分析）
Ketomihine
research
bioinformatics
0
phylogenetic-methods
Comprehensive guide to phylogenetic tree building methods including distance-based (UPGMA, Neighbor-Joining), maximum likelihood (RAxML, IQ-TREE), and Bayesian inference (MrBayes). Covers multiple sequence alignment, distance matrices, bootstrap analysis, consensus methods, tree formats (Newick, Nexus), and tree comparison metrics. Includes implementation patterns for tree visualization and evaluation.
roeimed0
research
bioinformatics
0
balkan-family-tree
Comprehensive skill for working with Balkan Family Tree JS libraries (V1 and V2). Use when creating family tree visualizations, genealogy applications, org charts with family relationships, or when migrating between library versions. Covers initialization, data structures, templates, events, node manipulation, and V1→V2 migration patterns.
ViaScopi
research
bioinformatics
0
mip-annotate
Phase 2 of MIP pipeline - Orchestrate parallel annotation of all 9 chapters using subagents. Each chapter analyzed independently for metaphors.
gjohnsx
research
bioinformatics
0
seurat-local
Seurat 文档本地镜像（Satija Lab docs，包含 seurat/ 子目录与 archive）
Ketomihine
research
bioinformatics
0
hierarchical-models
Patterns for hierarchical/multilevel Bayesian models including random effects, partial pooling, and centered vs non-centered parameterizations.
choxos
research
bioinformatics
0
vision-analytics
Advanced visibility analysis using head pose, face mesh, and temporal patterns. Use for face-visible vs body-only breakdowns.
therealityreport
research
bioinformatics
0
rweq-proofs
Helps construct RwEq (rewrite equivalence) proofs using transitivity, congruence, and canonical lemmas from the LND_EQ-TRS system. Use when proving path equalities, working with quotients, or establishing rewrite equivalences in the ComputationalPaths library.
Arthur742Ramos
research
bioinformatics
0
full-workflow
Execute the complete dsRNA design workflow with human confirmation at each step
katalyzeAI
research
bioinformatics
0
scanpy-single-cell-analysis
Python-based single cell analysis using Scanpy for .h5ad files in conda scanpy environment
Ketomihine
research
bioinformatics
0
bio-vcf
This skill should be used when the user asks to analyze, filter, or inspect VCF/BCF variant files from WGS/WES sequencing. Triggers include requests to calculate variant statistics, filter variants by quality/depth/frequency, extract variants from specific chromosomes or regions, or export variant data as JSON for downstream analysis.
dakesan
research
bioinformatics
0
scarches-complete
scArches 单细胞深度学习参考图谱框架 - 100%覆盖文档（26个HTML文件，包含完整API、教程、模型训练、多模态整合）
Ketomihine
research
bioinformatics
0
liana-py-complete
Liana-py 细胞互作分析工具包 - 100%覆盖文档（60个核心文件+72个图片文件）
Ketomihine
research
bioinformatics
0
gpu-correlation-caching
GPU-accelerated correlation matrix computation with persistent SQLite caching to eliminate bottleneck at correlation calculation during symbol selection
smith6jt-cop
research
bioinformatics
0
organ-axis-complete
Organ Axis tutorial docs - 100%覆盖文档（模型应用+公式+注释采样+教程)
Ketomihine
research
bioinformatics
0
trip-reconstruction
Fill gaps between checkpoints using hybrid GPS (70%) + address (30%) template matching with high confidence
ceo-whyd-it
research
bioinformatics
0
fetch-genome
Download CDS sequences from NCBI RefSeq for a target species
katalyzeAI
research
bioinformatics
0
obsidian-analysis-pipeline
Orquesta analisis semantico del vault (conceptos, grafo, embeddings y busqueda) con procesamiento por lotes y manejo de errores.
AlejandroIglesiasCalvo
research
bioinformatics
0
statgen-skills
Statistical genetics toolkit for fine-mapping (SuSiE), LD score regression (LDSC), and TWAS simulation, with support for GWAS summary statistics, heritability estimation, genetic correlations, and publication-ready reports
CamelliaRui
research
bioinformatics
0
mapping-fixer
Diagnose and fix broken bone/blend shape/annotation mappings on 3D characters. Analyzes model data, compares against presets, extracts animation data, and generates corrected mappings. Use when annotations don't work, AUs don't animate correctly, or importing new character models. Primary focus on skeletal-only models like the Betta fish.
meekmachine
research
bioinformatics
0
tsa-integration
Trial Sequential Analysis for meta-analyses with information size calculations
matheus-rech
research
bioinformatics
0
sc-best-practices-complete-100percent
单细胞分析最佳实践集合 - 100%完整覆盖（410个文件：407个HTML文档+3个项目文档）
Ketomihine
research