single-cell-rna-qc
Perform quality control on single-cell RNA-seq data (.h5ad, 10x .h5, or 10x directories) using scverse best practices, MAD-based filtering (log1p counts/genes, high-tail MT%), and generate filtered AnnData plus QC plots and summary JSON. Use when users request scRNA-seq QC, filtering low-quality cells, data quality assessment, or QC visualizations.
Installation and usage
Perform quality control on single-cell RNA-seq data (.h5ad, 10x .h5, or 10x directories) using scverse best practices, MAD-based filtering (log1p counts/genes, high-tail MT%), and generate filtered AnnData plus QC plots and summary JSON. Use when users request scRNA-seq QC, filtering low-quality cells, data quality assessment, or QC visualizations.
इंस्टॉल करने के बाद, आप टर्मिनल में यह कमांड चलाकर इस स्किल का उपयोग कर सकते हैं:
skills use single-cell-rna-qc