bioinformatics
538
blast-sequence-search
BLAST skill for sequence similarity searching, homology detection, and database querying
a5c-ai
research
sorting
stars
current ordering strategy
query
all entries
refine the visible subset
bioinformatics
538
xps-surface-analyzer
X-ray Photoelectron Spectroscopy analysis skill for surface composition, chemical state, and depth profiling
a5c-ai
research
bioinformatics
538
tem-image-analyzer
Transmission Electron Microscopy image analysis skill for nanoparticle size, morphology, and crystallography assessment
a5c-ai
research
bioinformatics
538
alphafold-predictor
AlphaFold protein structure prediction skill with confidence assessment and model analysis
a5c-ai
research
bioinformatics
538
sem-eds-analyzer
Scanning Electron Microscopy with Energy Dispersive X-ray Spectroscopy skill for morphology and elemental analysis
a5c-ai
research
bioinformatics
538
saxs-waxs-analyzer
Small/Wide Angle X-ray Scattering skill for nanostructure size, shape, and organization analysis
a5c-ai
research
bioinformatics
538
acmg-variant-classifier
ACMG/AMP variant classification skill for systematic pathogenicity assessment
a5c-ai
research
bioinformatics
538
numerical-linear-algebra-toolkit
High-performance numerical linear algebra operations
a5c-ai
research
bioinformatics
538
linearizability-checker
Check linearizability of concurrent data structure implementations
a5c-ai
research
bioinformatics
538
electre-comparator
ELECTRE family methods skill for outranking-based decision support with concordance and discordance analysis
a5c-ai
research
bioinformatics
538
string-network-analyzer
STRING protein interaction network skill for functional enrichment and network visualization
a5c-ai
research
bioinformatics
499
seedance-pipeline
Integrate Seedance 2.0 with ComfyUI nodes and post-processing chains covering upscale, frame interpolation, color grade, composite, and metadata cleanup. Use when building automated video pipelines, connecting Seedance to external tools, or finishing and delivering a generated video clip.
Emily2040
research
bioinformatics
492
rev-struct
Reconstruct data structures by analyzing memory access patterns across functions
P4nda0s
research
bioinformatics
488
biomcp
Search and retrieve biomedical data - genes, variants, clinical trials, articles, drugs, diseases, pathways, proteins, adverse events, pharmacogenomics, and phenotype-disease matching. Use for gene function, variant pathogenicity, trials, drug safety, pathway context, disease workups, and literature evidence.
genomoncology
research
bioinformatics
471
bio-chipseq-visualization
Visualize ChIP-seq data using deepTools, Gviz, and ChIPseeker. Create heatmaps, profile plots, and genome browser tracks. Visualize signal around peaks, TSS, or custom regions. Use when visualizing ChIP-seq signal and peaks.
GPTomics
research
bioinformatics
471
bio-workflows-expression-to-pathways
Workflow from differential expression results to functional enrichment analysis. Covers GO, KEGG, Reactome enrichment with clusterProfiler and visualization. Use when taking DE results to pathway enrichment.
GPTomics
research
bioinformatics
471
bio-metagenomics-visualization
Visualize metagenomic profiles using R (phyloseq, microbiome) and Python (matplotlib, seaborn). Create stacked bar plots, heatmaps, PCA plots, and diversity analyses. Use when creating publication-quality figures from MetaPhlAn, Bracken, or other taxonomic profiling output.
GPTomics
research
bioinformatics
471
bio-pathway-enrichment-visualization
Visualize enrichment results using enrichplot package functions. Use when creating publication-quality figures from clusterProfiler results. Covers dotplot, barplot, cnetplot, emapplot, gseaplot2, ridgeplot, and treeplot.
GPTomics
research
bioinformatics
471
bio-data-visualization-upset-plots
Create UpSet plots to visualize set intersections as an alternative to Venn diagrams using UpSetR or upsetplot. Use when comparing overlapping gene sets, peak sets, or sample groups with more than 3 sets.
GPTomics
research
bioinformatics
471
bio-population-genetics-association-testing
Genome-wide association studies (GWAS) with PLINK. Perform case-control and quantitative trait association testing using logistic/linear regression with covariates, generate Manhattan and QQ plots for result visualization. Use when running GWAS or association tests.
GPTomics
research
bioinformatics
471
bio-data-visualization-heatmaps-clustering
Create clustered heatmaps with row/column annotations using ComplexHeatmap, pheatmap, and seaborn for gene expression and omics data visualization. Use when visualizing expression patterns across samples or identifying co-expressed gene clusters.
GPTomics
research
bioinformatics
471
bio-data-visualization-volcano-customization
Create publication-ready volcano plots with custom thresholds, gene labels, and highlighting using ggplot2, EnhancedVolcano, or matplotlib. Use when visualizing differential expression or association results with gene annotations.
GPTomics
research
bioinformatics
471
bio-copy-number-gatk-cnv
Call copy number variants using GATK best practices workflow. Supports both somatic (tumor-normal) and germline CNV detection from WGS or WES data. Use when following GATK best practices or integrating CNV calling with other GATK variant pipelines.
GPTomics
research
bioinformatics
471
bio-ribo-seq-translation-efficiency
Calculate translation efficiency (TE) as the ratio of ribosome occupancy to mRNA abundance. Use when comparing translational regulation between conditions or identifying genes with altered translation independent of transcription.
GPTomics
research