home/categories/scientific-computing/gptomics-bioskills-population-genetics-linkage-disequilibrium-skill-md
scientific-computingresearch
bio-population-genetics-linkage-disequilibrium
Calculate linkage disequilibrium statistics (r², D'), perform LD pruning for population structure analysis, identify haplotype blocks, and visualize LD patterns using PLINK, scikit-allel, and LDBlockShow. Use when calculating LD or pruning variants.
maintainer
GPTomics
更新日 2/13/2026
スター
471
フォーク
81
quick start
Installation and usage
Calculate linkage disequilibrium statistics (r², D'), perform LD pruning for population structure analysis, identify haplotype blocks, and visualize LD patterns using PLINK, scikit-allel, and LDBlockShow. Use when calculating LD or pruning variants.
インストール
$ install --globalskills.sh
使い方
インストール後、ターミナルで以下のコマンドを実行してこのスキルを使用できます：
skills use bio-population-genetics-linkage-disequilibrium