home/categories/bioinformatics/gptomics-bioskills-rna-quantification-tximport-workflow-skill-md
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bio-rna-quantification-tximport-workflow

Import transcript-level quantifications from Salmon/kallisto into R for gene-level analysis with DESeq2/edgeR using tximport or tximeta. Use when importing transcript counts into R for DESeq2/edgeR.

GPTomics
maintainer
GPTomics
更新日 2/13/2026
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quick start

Installation and usage

Import transcript-level quantifications from Salmon/kallisto into R for gene-level analysis with DESeq2/edgeR using tximport or tximeta. Use when importing transcript counts into R for DESeq2/edgeR.

インストール
$ install --globalskills.sh
使い方

インストール後、ターミナルで以下のコマンドを実行してこのスキルを使用できます:

skills use bio-rna-quantification-tximport-workflow