home/categories/bioinformatics/pharmolix-openbiomed-skills-single-cell-scrna-seq-analysis-scanpy-skill-md
bioinformaticsresearch
single-cell-scrna-seq-analysis-scanpy
Complete single-cell RNA-seq analysis workflow built on Scanpy and AnnData. Use this skill when: (1) Loading diverse single-cell data formats (10X, h5ad, CSV), (2) Performing quality control and filtering, (3) Normalization, dimensionality reduction, and clustering, (4) Marker gene identification and cell type annotation.
maintainer
PharMolix
更新日 2026/3/16
スター
1036
フォーク
120
quick start
Installation and usage
Complete single-cell RNA-seq analysis workflow built on Scanpy and AnnData. Use this skill when: (1) Loading diverse single-cell data formats (10X, h5ad, CSV), (2) Performing quality control and filtering, (3) Normalization, dimensionality reduction, and clustering, (4) Marker gene identification and cell type annotation.
インストール
$ install --globalskills.sh
使い方
インストール後、ターミナルで以下のコマンドを実行してこのスキルを使用できます：
skills use single-cell-scrna-seq-analysis-scanpy