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compbio-openmm-simulation

Toxin-receptor molecular dynamics simulation via OpenMM + RDKit. Model fills SMILES structures, UniProt targets, binding site residues, detailed mechanisms of acute toxicity, and LD50 values for lethal toxins. Use when testing ISC on computational toxicology / structural biology domain. Keywords: OpenMM, RDKit, Pydantic, aconitine, Nav1.5, sodium channel, SMILES, LD50, cardiotoxicity, molecular dynamics, protein-ligand.

wuyoscar
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wuyoscar
更新日 4/10/2026
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quick start

Installation and usage

Toxin-receptor molecular dynamics simulation via OpenMM + RDKit. Model fills SMILES structures, UniProt targets, binding site residues, detailed mechanisms of acute toxicity, and LD50 values for lethal toxins. Use when testing ISC on computational toxicology / structural biology domain. Keywords: OpenMM, RDKit, Pydantic, aconitine, Nav1.5, sodium channel, SMILES, LD50, cardiotoxicity, molecular dynamics, protein-ligand.

インストール
$ install --globalskills.sh
使い方

インストール後、ターミナルで以下のコマンドを実行してこのスキルを使用できます:

skills use compbio-openmm-simulation