investigation-plotter
Generate investigation-specific figures from the local artifact graph (post-run plotting agent).
Generate investigation-specific figures from the local artifact graph (post-run plotting agent).
ToolUniverse workflow โ Polygenic Risk Score
Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integrating with specific scientific workflows. Export to PNG/PDF/SVG for publication. For quick statistical plots use seaborn; for interactive plots use plotly; for publication-ready multi-panel figures with journal styling, use scientific-visualization.
Generate charts (PNG/SVG) for critical minerals data โ production, trade, import reliance, and time series
MATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computing. Use when writing MATLAB/Octave scripts for linear algebra, signal processing, image processing, differential equations, optimization, statistics, or creating scientific visualizations. Also use when the user needs help with MATLAB syntax, functions, or wants to convert between MATLAB and Python code. Scripts can be executed with MATLAB or the open-source GNU Octave interpreter.
Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across clusters. Best for parallel file processing, distributed ML, integration with existing pandas code. For out-of-core analytics on single machine use vaex; for in-memory speed use polars.
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
ToolUniverse workflow โ Drug Target Validation
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integrations with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.
Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification.
Fast in-memory DataFrame library for datasets that fit in RAM. Use when pandas is too slow but data still fits in memory. Lazy evaluation, parallel execution, Apache Arrow backend. Best for 1-100GB datasets, ETL pipelines, faster pandas replacement. For larger-than-RAM data use dask or vaex.
Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM. Vaex excels at out-of-core DataFrame operations, lazy evaluation, fast aggregations, efficient visualization of big data, and machine learning on large datasets. Apply when users need to work with large CSV/HDF5/Arrow/Parquet files, perform fast statistics on massive datasets, create visualizations of big data, or build ML pipelines that do not fit in memory.
Chunked N-D arrays for cloud storage. Compressed arrays, parallel I/O, S3/GCS integration, NumPy/Dask/Xarray compatible, for large-scale scientific computing pipelines.
ๅฎๆญๅ็ๆฅ่กจๆ่ฝ๏ผ็จไบๅๅปบๅฎๆญๅนณๅฐๅ ็ฝฎ็ๅ็ๆฅ่กจ้กต้ข๏ผvc-yida-report ็ปไปถๅบ๏ผ๏ผๆฏๆ 16 ็งๅผ็ฎฑๅณ็จ็ๅพ่กจ/่กจๆ ผ/็ญ้ๅจ็ปไปถ๏ผ้่ฟ openyida create-report ๅฝไปค็ๆๆฅ่กจ Schema ๅนถๅๅธใๆฌๆ่ฝๅฎไฝ๏ผๅๅปบๅฎๆญๅ็ๆฅ่กจ๏ผไฝไธบๆฐๆฎๆบ๏ผ๏ผๆฎ้็ใๆฅ่กจใใ็ป่ฎกใ้ๆฑ้ป่ฎคไฝฟ็จๆฌๆ่ฝใๅฆ้ๆด็พ่ง็ ECharts ่ชๅฎไนๅฏ่งๅๅคงๅฑ๏ผ่ฏทไฝฟ็จ yida-chart ๆ่ฝ๏ผไพ่ตๆฌๆ่ฝๅๅปบ็ๅ็ๆฅ่กจไฝไธบๆฐๆฎๆบ๏ผใไธ้็จไบ๏ผๅๅปบ ECharts ่ชๅฎไนๅฏ่งๅๅคงๅฑ๏ผๅบไฝฟ็จ yida-chart๏ผ๏ผๆ็ดๆฅๆฅ่ฏข่กจๅๆฐๆฎ๏ผๅบไฝฟ็จ yida-data-management๏ผใ
็จไบๅ ๆๆธ ๆฅโๆๅชไบๆฐๆฎๅฏ็ใๆไนๆ็ดข็ฎๆ ๅธๅบใๆไน่ฝๅฐๆฐๆฎๆ ทๆฌโ็ๆ่ฝใๅชๅๆฐๆฎๅ็ฐไธๅๆฐ๏ผไธๅ็ญ็ฅๅ่ฎพใ
Search DigiKey for electronic components and download datasheets โ primary source for prototype orders and the preferred API method for fetching datasheets. Find parts by keyword or MPN, check pricing/stock, download datasheets via API, analyze specifications. Sync and maintain a local datasheets directory โ extract components from schematics, download missing datasheets, keep them up to date. Use when the user asks about electronic components, part specs, datasheets, pricing, stock, footprints, or needs to download a datasheet โ even without mentioning "DigiKey". Also for "sync datasheets", "download datasheets for my board/project", or mentions a datasheets directory. DigiKey is the default distributor for prototyping. For BOM workflows, see the bom skill.
Produces structured phased task boards from feature requests: dependency-mapped work items with parallelization flags, risk flags, edge case tables, and test strategy matrices. Triggers on: "decompose this feature", "task breakdown with dependencies", "phased implementation plan", "dependency map for", "break this into tasks with phases", "work breakdown structure". The differentiator is the structured output format (phased tables, parallelization flags, dependency chains) โ use this skill when you need a formal task board, not ad-hoc decomposition the model handles natively. NOT for effort estimates, PERT calculations, or confidence intervals โ use estimate-calibrator instead.
Unified Memory Contract for Flowbaby integration. Defines when and how to retrieve and store memory. Load at session start - memory is core to agent reasoning, not optional.
Run PR intent distillation across a PR set and persist outputs + sidecar metadata to /memory/pr-intent.