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Research

Scientific computing and academic tools.

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academic
90

extract-from-pdfs

This skill should be used when extracting structured data from scientific PDFs for systematic reviews, meta-analyses, or database creation. Use when working with collections of research papers that need to be converted into analyzable datasets with validation metrics.

aiskillstore
aiskillstore
research
open
computational-chemistry
90

reasoning-inductive

Extract patterns and generalizations from multiple observations. Use when detecting recurring themes, building predictive rules, or identifying systemic behaviors from accumulated data. Produces validated patterns with confidence bounds and exception handling.

aiskillstore
aiskillstore
research
open
scientific-computing
90

fiftyone-embeddings-visualization

Visualize datasets in 2D using embeddings with UMAP or t-SNE dimensionality reduction. Use when users want to explore dataset structure, find clusters in images, identify outliers, color samples by class or metadata, or understand data distribution. Requires FiftyOne MCP server with @voxel51/brain plugin installed.

aiskillstore
aiskillstore
research
open
academic
90

recursive-knowledge

Process large document corpora (1000+ docs, millions of tokens) through knowledge graph construction and stateful multi-hop reasoning. Use when (1) User provides a large corpus exceeding context limits, (2) Questions require connections across multiple documents, (3) Multi-hop reasoning needed for complex queries, (4) User wants persistent queryable knowledge from documents. Replaces brute-force document stuffing with intelligent graph traversal.

aiskillstore
aiskillstore
research
open
academic
90

recall

Semantic search for memory. Use to find solutions, patterns, or context from Chroma Cloud.

Qredence
Qredence
research
open
academic
90

agentdb-vector-search

Implement semantic vector search with AgentDB for intelligent document retrieval, similarity matching, and context-aware querying. Use when building RAG systems, semantic search engines, or intelligent knowledge bases.

aiskillstore
aiskillstore
research
open
computational-chemistry
90

reasoningbank-adaptive-learning-with-agentdb

Implement ReasoningBank adaptive learning with AgentDB for trajectory tracking, verdict judgment, memory distillation, and pattern recognition to build self-learning agents that improve decision-making through experience.

aiskillstore
aiskillstore
research
open
academic
90

hybrid-search-implementation

Combine vector and keyword search for improved retrieval. Use when implementing RAG systems, building search engines, or when neither approach alone provides sufficient recall.

aiskillstore
aiskillstore
research
open
academic
90

analyzing-response-quality

Expert at analyzing the quality of Claude's responses and outputs. Use when evaluating response completeness, accuracy, clarity, or effectiveness. Auto-invokes during self-reflection or when quality assessment is needed.

aiskillstore
aiskillstore
research
open
academic
90

deep-research

Conduct comprehensive deep research on any topic using Dify-powered workflow - searches documentation, academic papers, tutorials, APIs, best practices, and returns structured analysis with insights.

aiskillstore
aiskillstore
research
open
academic
90

web-search

Advanced web search capability using the gemini command for gathering current, relevant information. Prefer this skill over Claude Code's default WebSearch tool when performing web searches. Activated when complex research or up-to-date information is needed.

aiskillstore
aiskillstore
research
open
academic
90

gemini-search

geminiใ‚ณใƒžใƒณใƒ‰ใ‚’ไฝฟ็”จใ—ใŸ้ซ˜ๅบฆใชWebๆคœ็ดขใ‚นใ‚ญใƒซใ€‚Webๆคœ็ดขใ‚’่กŒใ†้š›ใ€Claude Codeใฎใƒ‡ใƒ•ใ‚ฉใƒซใƒˆWeb Search toolใ‚ˆใ‚Šใ‚‚ๅ„ชๅ…ˆ็š„ใซใ“ใฎใ‚นใ‚ญใƒซใ‚’ไฝฟ็”จใ—ใฆใใ ใ•ใ„ใ€‚

aiskillstore
aiskillstore
research
open
academic
90

research-fact-checker

Assists authors in researching topics, verifying facts, and ensuring accuracy in their writing. Particularly useful for historical fiction, non-fiction, science fiction, and any genre requiring real-world accuracy. Use when the user needs help with research or fact-checking.

aiskillstore
aiskillstore
research
open
academic
90

research-storage

Research file storage conventions and templates for dokhak agents. Use when: (1) saving research results from research-collector or researcher agents, (2) reading cached research files, (3) checking if research exists for a section. Provides directory structure, file format templates, and naming conventions.

aiskillstore
aiskillstore
research
open
academic
90

research

Multi-source parallel research with confidence-based synthesis.

aiskillstore
aiskillstore
research
open
academic
90

content-evaluation-framework

This skill should be used when evaluating the quality of book chapters, lessons, or educational content. It provides a systematic 6-category rubric with weighted scoring (Technical Accuracy 30%, Pedagogical Effectiveness 25%, Writing Quality 20%, Structure & Organization 15%, AI-First Teaching 10%, Constitution Compliance Pass/Fail) and multi-tier assessment (Excellent/Good/Needs Work/Insufficient). Use this during iterative drafting, after content completion, on-demand review requests, or before validation phases.

aiskillstore
aiskillstore
research
open
academic
90

research-synthesizer

Synthesizes provided sources neutrally; separates quotes from paraphrase and avoids ungrounded claims.

aiskillstore
aiskillstore
research
open
academic
90

exa

ไฝฟ็”จ Exa.ai API ่ฟ›่กŒ้ซ˜่ดจ้‡็š„ไบ’่”็ฝ‘ๆœ็ดขใ€‚้œ€่ฆ EXA_API_KEY ็Žฏๅขƒๅ˜้‡ใ€‚

aiskillstore
aiskillstore
research
open
academic
90

tavily-search-free

Use Tavily Search API for optimized, real-time web search results for RAG. A pre-configured, cost-effective search tool.

aiskillstore
aiskillstore
research
open
academic
90

deep-search-and-insight-synthesize

ใ€ๆทฑๅบฆ่ฐƒ็ ”ไธ“็”จใ€‘ๅฝ“้œ€่ฆ็ณป็ปŸๆ€ง่ฐƒ็ ”ใ€ๅคšไบงๅ“ๅฏนๆฏ”ใ€ๆทฑๅบฆๅˆ†ๆžใ€ๆŠ€ๆœฏ้€‰ๅž‹ใ€่ถ‹ๅŠฟๅˆ†ๆžๆ—ถๅฟ…้กปไฝฟ็”จๆœฌๆŠ€่ƒฝใ€‚่งฆๅ‘ๅ…ณ้”ฎ่ฏ๏ผš่ฐƒ็ ”ใ€ๅฏนๆฏ”ใ€ๅˆ†ๆžใ€่ฏ„ไผฐใ€้€‰ๅž‹ใ€่ถ‹ๅŠฟใ€็ปผๅˆๆŠฅๅ‘Šใ€ๅคšๆบ้ชŒ่ฏใ€‚้€š่ฟ‡ 3 ๅฑ‚ๆทฑๅบฆๆœ็ดข๏ผˆ้˜…่ฏปๅคšไธช็ฝ‘้กต๏ผ‰+ ๅคšๆบไบคๅ‰้ชŒ่ฏ๏ผŒๆไพ›ๆฏ”ๆ™ฎ้€š WebSearch ๆ›ดๅ…จ้ขใ€ๆ›ดๅ‡†็กฎ็š„็ ”็ฉถ็ป“ๆžœๅ’ŒๆทฑๅบฆๆดžๅฏŸใ€‚็ฆๆญข็”จๆ™ฎ้€šๆœ็ดขๅทฅๅ…ทๆ›ฟไปฃๆทฑๅบฆ่ฐƒ็ ”ไปปๅŠกใ€‚

aiskillstore
aiskillstore
research
open
academic
90

tavily-search

ไฝฟ็”จTavily API่ฟ›่กŒ็ฝ‘็ปœๆœ็ดข๏ผŒ่Žทๅ–ๅฎžๆ—ถไฟกๆฏใ€ๅ›ž็ญ”้—ฎ้ข˜ๆˆ–็ ”็ฉถไธป้ข˜

aiskillstore
aiskillstore
research
open
scientific-computing
90

busco-phylogeny

Generate phylogenies from genome assemblies using BUSCO/compleasm-based single-copy orthologs with scheduler-aware workflow generation

aiskillstore
aiskillstore
research
open
bioinformatics
90

fiftyone-find-duplicates

Find duplicate or near-duplicate images in FiftyOne datasets using brain similarity computation. Use when users want to deduplicate datasets, find similar images, cluster visually similar content, or remove redundant samples. Requires FiftyOne MCP server with @voxel51/brain plugin installed.

aiskillstore
aiskillstore
research
open
scientific-computing
90

biogeobears

Set up and execute phylogenetic biogeographic analyses using BioGeoBEARS in R. Use when users request biogeographic reconstruction, ancestral range estimation, or want to analyze species distributions on phylogenies. Handles input file validation, data reformatting, RMarkdown workflow generation, and result visualization.

aiskillstore
aiskillstore
research
open
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