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Scientific computing and academic tools.

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bioinformatics
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spata2-docs-local

SPATA2 ็ฉบ้—ด่ฝฌๅฝ•็ป„ๅญฆๅˆ†ๆžๅทฅๅ…ทๅŒ… - 100%่ฆ†็›–414ไธชๆ ธๅฟƒๆ–‡ไปถ๏ผˆ388ไธชAPIๅ‚่€ƒ+25ไธชๆ•™็จ‹+1ไธชไธป้กต๏ผ‰

Ketomihine
Ketomihine
research
open
scientific-computing
0

banksy-merged-v4

BANKSY spatial transcriptomics analysis tool - complete documentation with precise file name-based categorization

Ketomihine
Ketomihine
research
open
bioinformatics
0

mip-cluster

Phase 3 of MIP pipeline - Cluster all metaphor annotations into 4 major CMT systems, with quantitative analysis.

gjohnsx
gjohnsx
research
open
bioinformatics
0

novelty-gap-mapper

evidence-scoutใฎ็ตๆžœใ‚’ๅ—ใ‘ใ€็ ”็ฉถใ‚ฎใƒฃใƒƒใƒ—ใ‚’ไฝ“็ณป็š„ใซใƒžใƒƒใƒ”ใƒณใ‚ฐใ—ใ€ ๆ–ฐ่ฆๆ€งใฎ้ซ˜ใ„็ ”็ฉถๆฉŸไผšใ‚’็‰นๅฎšใƒปใ‚นใ‚ณใ‚ขใƒชใƒณใ‚ฐใ™ใ‚‹ใ€‚EHR-RWDใฎๅ„ชไฝๆ€งใ‚’ๆดปใ‹ใ—ใŸๅทฎๅˆฅๅŒ–ใƒใ‚คใƒณใƒˆใ‚’ๆ˜Ž็ขบๅŒ–ใ€‚

tito-gh
tito-gh
research
open
scientific-computing
0

ml-nmr-methodology

Deep methodology knowledge for ML-NMR including IPD/AgD integration, population adjustment, numerical integration, and prediction to target populations. Use when conducting or reviewing ML-NMR analyses.

choxos
choxos
research
open
scientific-computing
0

bio-bam

This skill should be used when the user asks to analyze BAM/SAM/CRAM alignment files from WGS/WES sequencing. Triggers include requests to extract reads from specific regions, identify insertions and deletions, calculate coverage statistics, or export read data as JSON for downstream analysis.

dakesan
dakesan
research
open
bioinformatics
0

group-sequential-methods

Group sequential design methods for interim analyses, alpha spending, and futility stopping. Use when designing trials with interim looks or implementing spending functions.

choxos
choxos
research
open
bioinformatics
0

multiplex-imaging-analysis

Optimizing segmentation feature extraction, SOM clustering, and spatial analysis for multiplex immunofluorescence imaging with cell compartment and ECM features

smith6jt-cop
smith6jt-cop
research
open
bioinformatics
0

stan-coding

Best practices for writing efficient, clean Stan programs

sunxd3
sunxd3
research
open
bioinformatics
0

sfh-gen

Generate fractal horn geometries using space-filling curves and Mandelbrot expansion. Use when designing horn topology, creating geometry variations, or exploring fractal approaches for acoustic optimization. Produces STL meshes and fractal analysis data.

toneron2
toneron2
research
open
bioinformatics
0

epsilon-yajna

Convert verbose memories to SSL v0.2 format - I am encoder AND decoder

genomewalker
genomewalker
research
open
bioinformatics
0

nma-methodology

Deep methodology knowledge for network meta-analysis including transitivity, consistency assessment, treatment rankings, and model selection. Use when conducting or reviewing NMA.

choxos
choxos
research
open
bioinformatics
0

face-alignment

Face alignment, landmark extraction, and quality gating. Use when debugging alignment issues, reviewing rejected faces, or tuning quality thresholds.

therealityreport
therealityreport
research
open
bioinformatics
0

scvelo-complete

scVelo RNA้€Ÿๅบฆๅˆ†ๆžๅทฅๅ…ทๅŒ… - 100%่ฆ†็›–ๆ–‡ๆกฃ๏ผˆ78ไธชๆ–‡ไปถ๏ผšๅฎŒๆ•ดAPI+ๆ•™็จ‹+ๅŠจๆ€ๅปบๆจก+ๅฏ่ง†ๅŒ–๏ผ‰

Ketomihine
Ketomihine
research
open
bioinformatics
0

scglue-complete

scGLUE ๅ•็ป†่ƒžๅคš็ป„ๅญฆๆ•ฐๆฎๆ•ดๅˆๅทฅๅ…ทๅŒ… - 100%่ฆ†็›–ๆ–‡ๆกฃ๏ผˆๅฎŒๆ•ดAPI+ๆ•™็จ‹+ๆ•ฐๆฎๆ•ดๅˆ+ๅ›พ่ฐฑๅˆ†ๆž๏ผ‰

Ketomihine
Ketomihine
research
open
bioinformatics
0

phylogenetic-methods

Comprehensive guide to phylogenetic tree building methods including distance-based (UPGMA, Neighbor-Joining), maximum likelihood (RAxML, IQ-TREE), and Bayesian inference (MrBayes). Covers multiple sequence alignment, distance matrices, bootstrap analysis, consensus methods, tree formats (Newick, Nexus), and tree comparison metrics. Includes implementation patterns for tree visualization and evaluation.

roeimed0
roeimed0
research
open
bioinformatics
0

bio-blat

Runs local BLAT searches for DNA sequence alignment against hg38 or CHM13 using local .2bit references. Use when a user wants to align a DNA sequence without relying on UCSC API access.

dakesan
dakesan
research
open
bioinformatics
0

balkan-family-tree

Comprehensive skill for working with Balkan Family Tree JS libraries (V1 and V2). Use when creating family tree visualizations, genealogy applications, org charts with family relationships, or when migrating between library versions. Covers initialization, data structures, templates, events, node manipulation, and V1โ†’V2 migration patterns.

ViaScopi
ViaScopi
research
open
bioinformatics
0

mip-annotate

Phase 2 of MIP pipeline - Orchestrate parallel annotation of all 9 chapters using subagents. Each chapter analyzed independently for metaphors.

gjohnsx
gjohnsx
research
open
bioinformatics
0

seurat-local

Seurat ๆ–‡ๆกฃๆœฌๅœฐ้•œๅƒ๏ผˆSatija Lab docs๏ผŒๅŒ…ๅซ seurat/ ๅญ็›ฎๅฝ•ไธŽ archive๏ผ‰

Ketomihine
Ketomihine
research
open
scientific-computing
0

identify-genes

Match essential genes in target genome using orthology and literature

katalyzeAI
katalyzeAI
research
open
bioinformatics
0

hierarchical-models

Patterns for hierarchical/multilevel Bayesian models including random effects, partial pooling, and centered vs non-centered parameterizations.

choxos
choxos
research
open
bioinformatics
0

vision-analytics

Advanced visibility analysis using head pose, face mesh, and temporal patterns. Use for face-visible vs body-only breakdowns.

therealityreport
therealityreport
research
open
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